View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16995_low_2 (Length: 677)

Name: NF16995_low_2
Description: NF16995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16995_low_2
NF16995_low_2
[»] chr8 (1 HSPs)
chr8 (1-657)||(44848754-44849411)


Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 657
Target Start/End: Original strand, 44848754 - 44849411
Alignment:
Q  1 ttttgacatgtttctttgagttgtttggcacactggtttgtgtctagttctaaatgtgtttacgttttgtctcgtttgatttgtcttatggtgataaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44848754 ttttgacatgtttctttgagttgtttggcacactggtttgtgtctagttctaaatgtgtttacgttttgtcttgtttgatttgtcttatggtgataaaga 44848853  T
Q  101 aaggctcatgctatcagatgttgagcgattcttgggcaaatatccactgccactccaccgaccctctccagcatcgtctcagcctcttgcatcaccttcc 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44848854 aaggctcatgctatcagatgttgaacgattcttgggcaaatatccactgccattccaccgaccctctccagcatcgtctcagcctcttgcatcaccttcc 44848953  T
Q  201 cacccgacaccatccatgcctctacccctgaagtattcttgtttatgccgacttcaggcataggagtatgtgcaatgaggaggaaaatggagactaccgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44848954 cacccgacaccatccatgcctctacccctgaagtattcttgtttatgcggacttcaggcataggagtatgtgcaatgaggaggaaaatggagactaccgc 44849053  T
Q  301 gaggaggatgaggaggtggaggaaaataatcctcatctcatgccagaaagtgatgccaatggaaatatcattgtaagaccatacggtagattttacgtta 400  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||    
T  44849054 gaggaggatgaggaggtgaaggaaaataatcctcatctcatgccagaaagagatgccaatggaaatatcattgtaagaccatacggtagagtgtaagtta 44849153  T
Q  401 caatactttgtttttctttcaatacttatgtaagttataatatttacttaatattttgtttctttaaataatttacaggctcactctcctag-aatgcag 499  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44849154 caatactttgtttttctttcaatacttatttaagttacaatatttacttaatattttgtttctttaaataatttacaggctcactctcctagcaatgcag 44849253  T
Q  500 ttgttgatgatgtcattaagagtgccacacacagtttgtggttcttagtcttaccattgttggagtgagacacccaaaaatgttagagatgagtggctgg 599  Q
    |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44849254 ttgttgatgatgtcattaagagcgccagacacagtttgtggtccttagtcttaccattgttggagtgagacacccaaaaatgttagagatgagtggctgg 44849353  T
Q  600 aaaaatgtgaggtaaggtagtgttcacttggcttctaagttatatccatatatatata 657  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44849354 aaaaatgtgacgtaaggtagtgttcacttggcttctaagttatatccatatatatata 44849411  T

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