View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16995_low_3 (Length: 596)
Name: NF16995_low_3
Description: NF16995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16995_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 18 - 589
Target Start/End: Complemental strand, 53550824 - 53550253
Alignment:
| Q |
18 |
ccagtaatttgaaactgcatattaacaaaatcactcacaatgtgacatactgatactcccaccatgctgctactaccggagaaaatccatactaaagtgc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53550824 |
ccagtaatttgaaactgcatattaacaaaatcactcacaatgtgacatactgatactcccaccatgctgctactaccggagaaaatccatactaaagtgc |
53550725 |
T |
|
| Q |
118 |
acttaactgcactaaggtaaataccattaaaggcaataatataaaagactgtttagactaaaccaaggcatgatttgatattacaacacaagcctgtata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53550724 |
acttaactgcactaaggtaaataccattaaaggcaataatataaaagactgtttagactaaaccaaggcatgatttgatattacaacacaagcctgtata |
53550625 |
T |
|
| Q |
218 |
aggttgaatgctcctttaaatatatatttttcccttttaaagataagcttgtcggtaccttgaacgggaagaaccacgcttcaccttatttcccgttgat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53550624 |
aggttgaatgctcctttaaatatatatttttcccttttaaagataagtttgttggcgccttgaacgggaagaaccacgcttcaccttatttcccgttgat |
53550525 |
T |
|
| Q |
318 |
taccaatcataggctacgtatgatgtaagaagcgcggttgagtgtttcaagatcagttgactatttcacattcactgaagcagccatactcctcagcttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53550524 |
taccaatcataggctacgtatgatgtaagaagcgcggttgagtgtttcaagatcagttgactatttcacattcactgaagcagccatactcctcagcttc |
53550425 |
T |
|
| Q |
418 |
ttggaaatttctgaaaatgatggcctttctacaggatcagaggcccaagaactttccatgagagatttccactcaggatcacaccatgtcgggatttgtg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53550424 |
ttggaaatttctgaaaatgatggcctttctacaggatcagaggcccaagaactctccatgagagatttccactcaggatcacaccatgtcgggatttgtg |
53550325 |
T |
|
| Q |
518 |
gacgtaaagtgttgttcacaattcctccttcaaaacaaagacaatagtgaacattgatatgcagtataatct |
589 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
53550324 |
gacgtaaagtgttgttcacaattcctccttcaaaacaaagacaatagtgaacattgatatgcagtatgatct |
53550253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University