View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16995_low_5 (Length: 544)
Name: NF16995_low_5
Description: NF16995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16995_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 14256500 - 14255962
Alignment:
| Q |
1 |
attagagactggttatatttttcgtatgaaattttccgtcattaatttaagtcgttctaatatacgtatgaaaattgatgtga---tgagcttaccctca |
97 |
Q |
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| T |
14256500 |
attagagacttattatattttttgtgtttaattttcagtcatttatttaagtttttctaatatatgtatgaaaattgatgtgaacatgagcttaccctca |
14256401 |
T |
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| Q |
98 |
caaagcaatcatgaaaatgtattctaatcaatccagcacctatgccaggattgagtgaaatagctttgtcaactgcacttctcactattgcctcagcaga |
197 |
Q |
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| T |
14256400 |
caaagcaatcatgaaaatgcattctaatcaatccagcacctataccaggattgagtgaaacagctttgtcaattgcacttctcactattgcctcagcaga |
14256301 |
T |
|
| Q |
198 |
tggacatgagtagctatagaaacccacctgcaaagatgctgaagccaatgaagaaatagatagaattatcaaaaccaagctagaaaccatttgatgcatg |
297 |
Q |
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| T |
14256300 |
tggacatgagtagctatagaaacccacctgcagagatgctgaagccaatgaagaaatagatagaattatcaaaaccaagctagaaaccatttgatgcatg |
14256201 |
T |
|
| Q |
298 |
tatggtatactatccattgttgtatgttggtgaagagaacttgtgttgaagtaattgtatttataggctaggaaatttgtgcttccttttgaaggtgcat |
397 |
Q |
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| T |
14256200 |
tatggtatactatccattgttgtatgttggtgaagagaacttgtgttgaagtaattgtatttataggctaggaaatttgtgcttccttttgaaggtgcat |
14256101 |
T |
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| Q |
398 |
--ttggtcctgaaatagttgaagttttctaagcattgaacacttctattttggttcaacttggtttctttattttaggataaatagagtgatgacatact |
495 |
Q |
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| T |
14256100 |
tattggtcctgaaatagttgaagttttctaagcattgaacacttctattttggttcaacttggtttctttatttttggataaatagagtgatgacatact |
14256001 |
T |
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| Q |
496 |
agaattgagtgtagtgggaatttttctattctacctatg |
534 |
Q |
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| T |
14256000 |
agaattgagtgtagtgggaatttttttattctacctatg |
14255962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 38697563 - 38697671
Alignment:
| Q |
97 |
acaaagcaatcatgaaaatgtattctaatcaatccagcacctatgccaggattgagtgaaatagctttgtcaactgcacttctcactattgcctcagcag |
196 |
Q |
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|||||||||||||||||||| ||||||||||| |||||| ||||| || |||||||||| |||||||| || || ||||| || |||||||| || | |
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| T |
38697563 |
acaaagcaatcatgaaaatgcattctaatcaaaccagcagtgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctccgcgg |
38697662 |
T |
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| Q |
197 |
atggacatg |
205 |
Q |
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| T |
38697663 |
atggacatg |
38697671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 38628718 - 38628624
Alignment:
| Q |
97 |
acaaagcaatcatgaaaatgtattctaatcaatccagcacctatgccaggattgagtgaaatagctttgtcaactgcacttctcactattgcctc |
191 |
Q |
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|||||||||||||||||||| ||||||||||| |||||| | ||||| || |||||||||| |||||||| || || ||||| || |||||||| |
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| T |
38628718 |
acaaagcaatcatgaaaatgcattctaatcaaaccagcagcgatgccggggttgagtgaaacagctttgtttacagctcttctaacaattgcctc |
38628624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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