View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16995_low_6 (Length: 512)
Name: NF16995_low_6
Description: NF16995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16995_low_6 |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 303 - 490
Target Start/End: Complemental strand, 42192981 - 42192794
Alignment:
| Q |
303 |
aattaagccaaataaaatcgaagagaaaatcaacaagattaacaaacaagagcttaccattagcaagatcaaggagaaaatcagcaggattaacaaagtt |
402 |
Q |
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| T |
42192981 |
aattaagctaaataaggtcaaagagaaaatcaacaggattaacaaacaataacttaccattagcaagatcaaggagaaaatcagcaggattaacaaagtt |
42192882 |
T |
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| Q |
403 |
gaaacccggaacaaacccaacggatccaagataatccataacccgacccgcattaccactataaatcggatacccatcggacaaaacc |
490 |
Q |
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| T |
42192881 |
aaaccctggaacaaacccaacggatccaagataatccataacccgacccgcattaccactgtaaatcggatacccatcagacaaaacc |
42192794 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 864356 - 864399
Alignment:
| Q |
107 |
cattttgcagatttggtctttctattttaaaatttgactgtttt |
150 |
Q |
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| T |
864356 |
cattttgcagatttggtccttctattttaaaatttgacagtttt |
864399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 39450650 - 39450719
Alignment:
| Q |
107 |
cattttgcagatttggtctttctattttaaaatttgactgttttg-gctctccatcttatttttgaacta |
175 |
Q |
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| T |
39450650 |
cattttgcagaattggtccccctattttaaaatttgacagttttgatccctccatcatatttttgaacta |
39450719 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 38435086 - 38435161
Alignment:
| Q |
79 |
taattgcaattttgat--tcctatttccgtcattttgcagatttggtctttctattttaaaatttgactgttttgg |
152 |
Q |
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| T |
38435086 |
taattgcagttttgatcctcctatttccatcattttgtggaatcggtcttcctattttaaaatttgacagttttgg |
38435161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 12499045 - 12499114
Alignment:
| Q |
107 |
cattttgcagatttggtctttctattttaaaatttgactgttttgg-ctctccatcttatttttgaacta |
175 |
Q |
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| T |
12499045 |
cattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatcatatttttgaacta |
12499114 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 1602763 - 1602720
Alignment:
| Q |
249 |
aaaacatatcttatcatcatattgtagaccaaatatttgatgga |
292 |
Q |
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| T |
1602763 |
aaaacatatcatatcaccatattttagaccaaatatttgatgga |
1602720 |
T |
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Target: scaffold0157 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 21432 - 21363
Alignment:
| Q |
107 |
cattttgcagatttggtctttctattttaaaatttgactgttttgg-ctctccatcttatttttgaacta |
175 |
Q |
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| T |
21432 |
cattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatcatatttttgaacta |
21363 |
T |
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