View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16995_low_7 (Length: 489)
Name: NF16995_low_7
Description: NF16995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16995_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 6263881 - 6264351
Alignment:
| Q |
1 |
gattggtgtaaacttgaatttcctaaggctgaagttctgatcataaatttcacatctaaggactactttttacctcctttcatagataaaatgccaaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6263881 |
gattggtgtaaacttgaatttcctaaggctgaagttctgatcataaatttcacatctaaggactactttttacctcctttcatagataaaatgccaaatt |
6263980 |
T |
|
| Q |
101 |
tgagagctctaatagtaataaactatagtgcatcatatgcatgccttcacaatgtttcagttttcaacaatttggccaacttgagaagcctgtggcttga |
200 |
Q |
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| T |
6263981 |
tgagagctctaatagtaataaactatagtgcatcatatacatgccttcacaatgtttcagttttcaacaatttggccaacttgagaagcctgtggcttga |
6264080 |
T |
|
| Q |
201 |
aaaagtttccatccctcaatttggaggcattctcatggaaaacttaggcaagttatttatagtttcatgtaagattaataacaatctagagggtaaagag |
300 |
Q |
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| T |
6264081 |
aaaagtttccatccctcaatttggaggcattctcatggaaaacttaggcaagttatttatagtttcatgtaagattaataacaatctagagggtaaagag |
6264180 |
T |
|
| Q |
301 |
gtaaatctgtctcaaatctttcctaacctctctgagatcactcttgatcattgtgatgatgtaacttctttaccctcaagcatttgtaggatacaatcac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6264181 |
gtaaatctgtctcaaatctttcctaacctctctgagatcactcttgatcattgtgatgatgtaacttctttaccctcaagcatttgtaggatacaatcac |
6264280 |
T |
|
| Q |
401 |
tccaaaacttgagtctcaccgaatgtcacaatttggaacaacttcctgttgaattaggcgcgctaagatct |
471 |
Q |
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| T |
6264281 |
tccaaaacttgagtctcaccgaatgtcacaatttggaacaacttcctgttgaattaggcgcgctaagatct |
6264351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 416
Target Start/End: Original strand, 6272549 - 6272949
Alignment:
| Q |
16 |
gaatttcctaaggctgaagttctgatcataaatttcacatctaaggactactttttacctcctttcatagataaaatgccaaatttgagagctctaatag |
115 |
Q |
| |
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|||||||||||||||||||| ||||| || ||||||||||| | || ||||| |||||||| |||||| ||| ||||||||| |||||||| |||| | |
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| T |
6272549 |
gaatttcctaaggctgaagtactgattattaatttcacatccagtgaatacttcttacctcccttcataaatagaatgccaaaattgagagcattaatgg |
6272648 |
T |
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| Q |
116 |
taataaactatagtgcatcatatgcatgccttcacaatgtttcagttttcaacaatttggccaacttgagaagcctgtggcttgaaaaagtttccatccc |
215 |
Q |
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|||||||| | || | |||||||| || ||||||||| | || |||||||| ||||| |||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
6272649 |
taataaaccacagcacttcatatgcttgtcttcacaatatatcggttttcaagaatttaaccaacttgaggagcctttggtttgaaaaagtttccatccc |
6272748 |
T |
|
| Q |
216 |
tcaatttggaggcattctcatggaaaacttaggcaagttatttatagtttcatgtaagattaataacaatctagagggtaaagaggtaaatctgtctcaa |
315 |
Q |
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|| || |||||| ||||||||| ||| | || || |||||||| |||||||| || |||| ||| || || ||||| ||| | | | |
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| T |
6272749 |
acacttatcaggcatagtcatggaaagcttgaggaaattgtttatagtcctttgtaagatcaacaacagtcttgaaggaaaagattcaaacatcgccgat |
6272848 |
T |
|
| Q |
316 |
atctttcctaacctctctgagatcactcttgatcattgtgatgatgtaacttctttaccctcaagcatttgtaggatacaatcactccaaaacttgagtc |
415 |
Q |
| |
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||||| |||||| |||| ||| |||| |||||||| ||||| |||||||| ||||| ||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
6272849 |
atcttccctaacatctcagagctcacgcttgatcactgtgaggatgtaaccgagttaccttcaagcatttgcaggatacagtcactacaaaacttgagtc |
6272948 |
T |
|
| Q |
416 |
t |
416 |
Q |
| |
|
| |
|
|
| T |
6272949 |
t |
6272949 |
T |
|
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