View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16995_low_9 (Length: 391)
Name: NF16995_low_9
Description: NF16995
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16995_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Complemental strand, 44720599 - 44720230
Alignment:
| Q |
6 |
agaagcataggcataagcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacatta |
105 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720599 |
agaaccataggcataagcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacatta |
44720500 |
T |
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| Q |
106 |
aaaactcaagtgctgccatactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaataatgataaattaga |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720499 |
aaaactcaagtgctgccatactcgataaacctaggtttgttatatgacttacaaatttgtataggatgtaactccatgcttagaataatgataaattaga |
44720400 |
T |
|
| Q |
206 |
tctaccatttcaaataagatgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagctgatattagtttgaaacaaagaagataa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44720399 |
cctaccatttcaaataagatgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagttgatattagtttgaaacaaagaagataa |
44720300 |
T |
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| Q |
306 |
aagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagttaattac |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44720299 |
aagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagttaattac |
44720230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 192 - 370
Target Start/End: Original strand, 43169572 - 43169742
Alignment:
| Q |
192 |
aatgataaattagatctaccatttcaaataagatgattgttctattttagtaaccgcttacttacttttggcttcttcttggtagctgatattagtttga |
291 |
Q |
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| T |
43169572 |
aatgataaattagacctgccatttcaaaaaggatgattgttctggtttagt----gcctgctttctttttgcttcttattggtagctgatattagtttga |
43169667 |
T |
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| Q |
292 |
aacaaagaagataaaagtaaatactgttagctacttgaacatatctgtttcatccattcttttatttttatgacagtta |
370 |
Q |
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| ||||||||||||||||||| | | || |||| | || |||||||||||| ||||||||||||||||||||||||| |
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| T |
43169668 |
a--aaagaagataaaagtaaat--tttgagatactcgcacgtatctgtttcattcattcttttatttttatgacagtta |
43169742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 38672782 - 38672672
Alignment:
| Q |
21 |
agcacatattttccctgccatatgcagtaagtaacttaatttcgtctacagttaacttttcaagataatatttcccgtcacattaaaaactcaagtgctg |
120 |
Q |
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||||||| ||||||||| |||||||||||||| |||||||||||| |||| |||| |||||||| ||||| || |||||||||||| ||||| | |
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| T |
38672782 |
agcacatcttttccctgttatatgcagtaagtac----atttcgtctacaattaaattttgaagataatctttcctgtaacattaaaaacttaagtgtcg |
38672687 |
T |
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| Q |
121 |
ccatactcgataaac |
135 |
Q |
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|||||||||||||| |
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| T |
38672686 |
tcatactcgataaac |
38672672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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