View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16996_high_11 (Length: 349)
Name: NF16996_high_11
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_11 |
 | |
|
| [»] scaffold0019 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 23 - 323
Target Start/End: Complemental strand, 23427134 - 23426826
Alignment:
| Q |
23 |
atcatcatggaatttgactattagacaacataggatcttattaccgatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaaga |
122 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23427134 |
atcatcatggaatttgactattagccaacataggatcttattaccgatattaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaaga |
23427035 |
T |
|
| Q |
123 |
tgctctcttccctttcatgtgtggtctcctttaaccatacttttcgagagnnnnnnnnnggtgcaagttgattgtctaagtttggtgctactaatgtcga |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23427034 |
tgctctcttccctttcatgtgtggtctcctttaaccatactttgtgagagaaaaaaaaa-gtgcaagttgattgtctaagtttggtgctactaatgtcga |
23426936 |
T |
|
| Q |
223 |
ttccttggttgtggatttctcatacttcttaattgaatatcattctgcttg---------ccagtgtgtgtaggtgtaagagttctttggctgaggtcat |
313 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23426935 |
ttccttagttgtggatttctcatacttcttaattgaatatcatcctgcttgcaaatacctccactgtgtgtaggtgtaagagttcttttgctgaggtcat |
23426836 |
T |
|
| Q |
314 |
acttacatga |
323 |
Q |
| |
|
|||| ||||| |
|
|
| T |
23426835 |
acttccatga |
23426826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 174774 - 174664
Alignment:
| Q |
55 |
ggatcttattaccgatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctcttccctttcatgtgtggtctccttt |
154 |
Q |
| |
|
|||| ||||| | |||||||| ||||||| ||||| ||||||| || ||||| |||||||| |||| ||||||||| ||||| || |||||||||||| |
|
|
| T |
174774 |
ggatattattgcggatactaataagaatgactttcatcctcatgcaaacttgttctctctcgttaagaggctctcttctctttcttgggtggtctccttt |
174675 |
T |
|
| Q |
155 |
aaccatacttt |
165 |
Q |
| |
|
|| |||||||| |
|
|
| T |
174674 |
aatcatacttt |
174664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 142654 - 142544
Alignment:
| Q |
55 |
ggatcttattaccgatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctcttccctttcatgtgtggtctccttt |
154 |
Q |
| |
|
|||| ||||| | |||||||| ||||||| ||||| ||||||| || ||||| |||||||| |||| ||||||||| ||||| | |||||||||||| |
|
|
| T |
142654 |
ggatattattgcggatactaataagaatgactttcatcctcatgcaaacttgttctctctcgttaagaggctctcttctctttctttggtggtctccttt |
142555 |
T |
|
| Q |
155 |
aaccatacttt |
165 |
Q |
| |
|
|| |||||||| |
|
|
| T |
142554 |
aatcatacttt |
142544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 44923075 - 44923214
Alignment:
| Q |
23 |
atcatcatggaatttgactattagacaacataggatcttattaccgatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaaga |
122 |
Q |
| |
|
||||||||||||| ||||| ||||||||| | |||||||||| |||||||| || ||||| ||||| ||||||| ||||||| |||||||| | | | |
|
|
| T |
44923075 |
atcatcatggaatctgactcttagacaacttcggatcttatt---gatactaaacaaaatgattttcatcctcatgcaactttgctttctctcattagaa |
44923171 |
T |
|
| Q |
123 |
tgctctcttccctttcatgtgtggtctcctttaaccatacttt |
165 |
Q |
| |
|
||| ||||| ||| |||| |||||||| |||| |||||||| |
|
|
| T |
44923172 |
agctttcttctcttccatgggtggtctcatttagtcatacttt |
44923214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 20012886 - 20012983
Alignment:
| Q |
68 |
gatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctcttccctttcatgtgtggtctcctttaaccatacttt |
165 |
Q |
| |
|
|||||||| ||||||| ||||| ||| ||| || ||| | |||||||| |||| ||| ||||| ||||| || |||||||||||||| |||||||| |
|
|
| T |
20012886 |
gatactaataagaatgactttcatccttatgcaaacttgctctctctcgttaagaggctttcttctctttcttgggtggtctcctttaatcatacttt |
20012983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 240
Target Start/End: Complemental strand, 16437036 - 16436984
Alignment:
| Q |
190 |
ttgattgtctaagtttggtgctactaatgtcgattccttg--gttgtggattt |
240 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
16437036 |
ttgattggctaagtttggtgctactaatatcgattacttgaagttgtggattt |
16436984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 165
Target Start/End: Complemental strand, 4415168 - 4415060
Alignment:
| Q |
57 |
atcttattaccgatactaagcagaatgaatttcaccctcatggaactttgttttctctcgtcaagatgctctcttccctttcatgtgtggtctcctttaa |
156 |
Q |
| |
|
|||||||| | |||| ||| ||||| || ||||| || ||||||| ||||||||||||| | | || ||||||||| || || |||||||||||||| |
|
|
| T |
4415168 |
atcttattgcggatattaatcagaacgactttcatccacatggaaatttgttttctctcattaggaagctctcttcttttctttgggtggtctcctttaa |
4415069 |
T |
|
| Q |
157 |
ccatacttt |
165 |
Q |
| |
|
|||||||| |
|
|
| T |
4415068 |
tcatacttt |
4415060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University