View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16996_high_12 (Length: 340)
Name: NF16996_high_12
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 312
Target Start/End: Complemental strand, 4535028 - 4534718
Alignment:
| Q |
2 |
caaacaatattacatagataaaagagaaactaatcaaaaaagttcttctcaacaatagattaaaaatctcttgatgattcaaatgtcactacaaaagaaa |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4535028 |
caaacaatattacatagataaaagagaaactaatcaaaaaagttcttctcaacaatagattaaaaatctcttgatgattcaaatgtcactacaaaagaaa |
4534929 |
T |
|
| Q |
102 |
tgaatggaactatcaatgaatataaattcagattttttataaataaaattgagcaatgaataagttgagcatctaaggatggaaaggtcgagatcttgtc |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4534928 |
tgaatggaactatcaatgaatataaattcagattttttataaataaaattgagcaatgaataagttgagcatctaaggatggaaaggtcgagatcttgtc |
4534829 |
T |
|
| Q |
202 |
catcatcgacgtcattctgctggggtttccagcgagatcaataccgttattaaaagcaacctacagagcagcaaattgaaaatatttatactacttataa |
301 |
Q |
| |
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||||| |||||||||||| || |||||| ||||||||||||| || ||||||||||||||||||| ||| |||| ||||||||||||||| || | |
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| T |
4534828 |
tgtcatcaacgtcattctgcaggagtttcctgcgagatcaatacggtgattaaaagcaacctacagaaaagccaattataaatatttatactacatagag |
4534729 |
T |
|
| Q |
302 |
tacataagtat |
312 |
Q |
| |
|
||||||||||| |
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| T |
4534728 |
tacataagtat |
4534718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 151
Target Start/End: Original strand, 24061896 - 24062043
Alignment:
| Q |
7 |
aatattacatagataaaagagaaactaatcaaaaaa-gttcttctcaacaatagattaaaaatctcttgat-gattcaaatgtcactacaaaagaaatga |
104 |
Q |
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||||||||||| ||||| || |||||||| |||||| ||| || ||||||||||||| || |||||||||| | | |||||| ||||| ||||||||||| |
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| T |
24061896 |
aatattacataaataaacgataaactaataaaaaaaagtttttttcaacaatagattcaacatctcttgatggctccaaatgccactaaaaaagaaatga |
24061995 |
T |
|
| Q |
105 |
atgg-aactatcaatgaatataaattcagattttttataaataaaatt |
151 |
Q |
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|||| || ||| |||||||||||||| | |||| | ||||||||||| |
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| T |
24061996 |
atggaaaatattaatgaatataaatttatatttctagtaaataaaatt |
24062043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 3975751 - 3975660
Alignment:
| Q |
18 |
gataaaagagaaactaatcaaaaaagtt-cttctcaacaatagattaaaaatctcttgatga-ttcaaatgtcactacaaaagaaatgaatg |
107 |
Q |
| |
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||||||||| ||| || |||||||| || ||||||||||||||||| || |||||||||| | | |||| | ||||||||||||||||||| |
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| T |
3975751 |
gataaaagataaagtagtcaaaaaaattacttctcaacaatagattcaacatctcttgataactccaaagttaactacaaaagaaatgaatg |
3975660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 48867420 - 48867392
Alignment:
| Q |
7 |
aatattacatagataaaagagaaactaat |
35 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
48867420 |
aatattacatagataaaagagaaactaat |
48867392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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