View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16996_high_13 (Length: 329)

Name: NF16996_high_13
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16996_high_13
NF16996_high_13
[»] chr8 (5 HSPs)
chr8 (8-329)||(24788360-24788681)
chr8 (71-327)||(38245904-38246160)
chr8 (228-271)||(38921194-38921237)
chr8 (66-134)||(34180960-34181028)
chr8 (108-164)||(36481465-36481521)
[»] chr2 (6 HSPs)
chr2 (91-316)||(38624051-38624274)
chr2 (79-279)||(5539796-5539996)
chr2 (102-271)||(36400387-36400556)
chr2 (66-151)||(40368314-40368399)
chr2 (117-271)||(15916391-15916544)
chr2 (89-190)||(7447088-7447189)
[»] chr6 (10 HSPs)
chr6 (71-313)||(29071256-29071498)
chr6 (71-313)||(29103829-29104071)
chr6 (71-235)||(19229348-19229514)
chr6 (82-327)||(18780623-18780868)
chr6 (230-297)||(19230121-19230188)
chr6 (102-271)||(3296884-3297053)
chr6 (230-271)||(24395702-24395743)
chr6 (230-271)||(18970902-18970943)
chr6 (240-280)||(9856416-9856456)
chr6 (231-271)||(21605321-21605361)
[»] chr5 (2 HSPs)
chr5 (66-280)||(25352450-25352664)
chr5 (119-277)||(16160223-16160381)
[»] chr1 (13 HSPs)
chr1 (81-314)||(14207232-14207465)
chr1 (83-211)||(41159443-41159571)
chr1 (216-281)||(33568653-33568718)
chr1 (180-280)||(31403955-31404055)
chr1 (108-164)||(38158249-38158305)
chr1 (216-283)||(46269208-46269275)
chr1 (60-145)||(23756778-23756863)
chr1 (66-151)||(47671316-47671401)
chr1 (228-283)||(48242237-48242292)
chr1 (225-271)||(22157822-22157868)
chr1 (96-145)||(6043684-6043733)
chr1 (78-190)||(81533-81645)
chr1 (108-164)||(45813902-45813958)
[»] chr7 (11 HSPs)
chr7 (80-280)||(13807878-13808078)
chr7 (137-316)||(13760835-13761013)
chr7 (216-283)||(43883964-43884031)
chr7 (79-163)||(19480659-19480743)
chr7 (216-280)||(1718297-1718361)
chr7 (66-286)||(6802788-6803008)
chr7 (66-194)||(29802594-29802722)
chr7 (240-280)||(49146368-49146408)
chr7 (226-271)||(9598592-9598637)
chr7 (226-271)||(9826163-9826208)
chr7 (106-191)||(26159689-26159774)
[»] chr3 (9 HSPs)
chr3 (106-286)||(3159566-3159746)
chr3 (66-286)||(38394746-38394966)
chr3 (216-283)||(43858280-43858347)
chr3 (228-322)||(47746376-47746470)
chr3 (228-271)||(10927136-10927179)
chr3 (226-271)||(53505588-53505633)
chr3 (108-160)||(41226543-41226595)
chr3 (216-258)||(11874398-11874440)
chr3 (225-271)||(15206043-15206089)
[»] chr4 (8 HSPs)
chr4 (106-191)||(18992050-18992132)
chr4 (66-255)||(48489116-48489305)
chr4 (66-286)||(12376823-12377043)
chr4 (228-283)||(53480776-53480831)
chr4 (106-192)||(41147925-41148011)
chr4 (135-273)||(3693116-3693251)
chr4 (81-255)||(11581185-11581359)
chr4 (108-164)||(2473527-2473583)
[»] scaffold0259 (1 HSPs)
scaffold0259 (119-271)||(4076-4228)
[»] scaffold0011 (1 HSPs)
scaffold0011 (207-286)||(218174-218253)
[»] scaffold0074 (1 HSPs)
scaffold0074 (230-271)||(25786-25827)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 24788360 - 24788681
Alignment:
Q  8 cgaagaatatttacacagtcaaggtactgcaaaaagcactagccaaaggctgaagaataaaatttacataagaacacccaaacaaagaatgggttgtctc 107  Q
    |||| |||||||||||||| ||||| || |||||||||||||||||||  ||| |||||||| ||||||||||||| ||| |||||||||||||||||||    
T  24788360 cgaaaaatatttacacagttaaggtgctacaaaaagcactagccaaagattgaggaataaaaattacataagaacaaccatacaaagaatgggttgtctc 24788459  T
Q  108 caccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgagagtaaagggagtagaaa 207  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  24788460 caccagtcgtggtaactataaacaaaagttacctgtttcgatttcaaccataagaatgaattcaactttactttttcaatgagagtaaagggagtagaaa 24788559  T
Q  208 ccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaataagtgtggaaataacggcatgcc 307  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24788560 ccgtgttatgaaaaattcagttattcctctccttccaaatcacccaaacagttgcaaaccaaataatcctgaaaaataagtgtgaaaataacggcatgcc 24788659  T
Q  308 cgccatcttggtgaattgagga 329  Q
    ||||||||||||||||||||||    
T  24788660 cgccatcttggtgaattgagga 24788681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 71 - 327
Target Start/End: Original strand, 38245904 - 38246160
Alignment:
Q  71 ttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattc 170  Q
    ||||| |||||||||||  ||||||||| | ||| |||||| ||| || ||||||||| ||||||||||  |||| |||||||||||||| ||| ||||     
T  38245904 ttacagaagaacacccatgcaaagaatgtggtgtttccaccggtcatgataactataagcaaaagccactagttttgatttcaaccataataatgaattg 38246003  T
Q  171 aactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaa 270  Q
    |||||||||||||||||||||||||| ||||| |  |||||||| ||||| |||  ||| ||| ||||||||||||||||||||  ||||||||||||||    
T  38246004 aactttactttttcaatgagagtaaaaggagtgggtaccgtgttttgaaatatctagttgttcttctccttccaaatcacccaattaattgcaaaccaaa 38246103  T
Q  271 taatcctgaaaaataagtgtggaaataacggcatgcccgccatcttggtgaattgag 327  Q
    ||||| |||| ||||| |||| ||||| |||||||||  ||||||| ||||| ||||    
T  38246104 taatcttgaagaataaatgtgaaaatatcggcatgccaaccatcttagtgaactgag 38246160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Original strand, 38921194 - 38921237
Alignment:
Q  228 ttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  38921194 ttattcctctccttccaaatgacccaaacagttgcaaaccaaat 38921237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 134
Target Start/End: Original strand, 34180960 - 34181028
Alignment:
Q  66 aaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaa 134  Q
    |||| ||||||||||||||||| ||||||||  || ||| ||||||| ||||| |||  ||||||||||    
T  34180960 aaaaattacataagaacacccatacaaagaacagggtgtttccaccaatcgtgataagaataaacaaaa 34181028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 36481521 - 36481465
Alignment:
Q  108 caccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaat 164  Q
    ||||||||||||||||||||| |||||   |||||||| | ||| ||||||||||||    
T  36481521 caccagtcgtggtaactataagcaaaattaacctgtttagtttttaaccataagaat 36481465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 91 - 316
Target Start/End: Complemental strand, 38624274 - 38624051
Alignment:
Q  91 aaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgag 190  Q
    |||||||||| ||||  ||||||||  ||||||||||| ||| |||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||    
T  38624274 aaagaatggggtgtcgtcaccagtcccggtaactataagcaagagccacttgttttgatttcaaccataagaatgaattgaactttactttttcaatgag 38624175  T
Q  191 agtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaataagtgt 290  Q
    |||||||| ||| || | ||| || ||||| ||| |||  ||| ||||||||||||||| ||||| | ||||||| |||||||||||||||||||| |||    
T  38624174 agtaaaggaagtggatatcgtattttgaaatatctggt--ttcatctccttccaaatcatccaaatagttgcaaagcaaataatcctgaaaaataaatgt 38624077  T
Q  291 ggaaataacggcatgcccgccatctt 316  Q
    | |||||| |||||||||||||||||    
T  38624076 gaaaataatggcatgcccgccatctt 38624051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 279
Target Start/End: Complemental strand, 5539996 - 5539796
Alignment:
Q  79 gaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttac 178  Q
    ||||| ||| ||||||||  || ||| |||||||||| || ||| ||||   ||| | ||||||||| ||||||||||| |||||||||||   ||| ||    
T  5539996 gaacatccatacaaagaagcggatgtttccaccagtcatgataattatagctaaaggacacctgttttgatttcaaccacaagaataaatttggcttaac 5539897  T
Q  179 tttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctg 278  Q
    ||||||||||||| || | ||| |||||||||| || ||||| |  | ||||||| | || ||||| |||||||||||    ||||||||||| ||||||    
T  5539896 tttttcaatgagaatagaaggattagaaaccgtattttgaaagacacagttattcttttctttccatatcacccaaacggaagcaaaccaaattatcctg 5539797  T
Q  279 a 279  Q
    |    
T  5539796 a 5539796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 102 - 271
Target Start/End: Original strand, 36400387 - 36400556
Alignment:
Q  102 tgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgagagtaaagggag 201  Q
    |||||||| |||||||||||| ||||| | || ||||||||||| ||||||| |||||||||  |||| | ||| ||||| ||| ||||  |  | |||     
T  36400387 tgtctccatcagtcgtggtaagtataagctaaggccacctgtttagatttcagccataagaaggaatttagcttgactttctcagtgagtattgaaggat 36400486  T
Q  202 tagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    | || | ||| || || || |  || ||||||||||||||||| |||||||||||| |||||||||||||    
T  36400487 tggatatcgtattttggaatacacgattattcctctccttccatatcacccaaacagttgcaaaccaaat 36400556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 40368314 - 40368399
Alignment:
Q  66 aaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgattt 151  Q
    |||| ||||||||||||||||| ||||| ||  || ||| ||||||| |||||||||  |||||||||| |||||||||| |||||    
T  40368314 aaaaattacataagaacacccatacaaaaaacagggtgtttccaccaatcgtggtaagaataaacaaaatccacctgtttagattt 40368399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 15916544 - 15916391
Alignment:
Q  117 tggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttat 216  Q
    |||||| ||||| |||| |||  |||||| ||||||||||||||||| | ||| ||||| ||||||| ||||||| |||| ||||| || ||||  || |    
T  15916544 tggtaattataaccaaaggccgtctgtttagatttcaaccataagaa-agattaaacttaacttttttaatgagaataaaaggagtggacaccgcatttt 15916446  T
Q  217 gaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||| |  || || ||| | |||||| |||||||||||| | ||||||| |||||    
T  15916445 gaaatacacgattgttcatttccttctaaatcacccaaagagttgcaaatcaaat 15916391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 7447088 - 7447189
Alignment:
Q  89 acaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatg 188  Q
    ||||||||| || ||| ||||||| |||||||||  |||| ||||||||| || ||| ||||||||||| | |||  ||| || ||| ||||||||||||    
T  7447088 acaaagaattgggtgtttccaccattcgtggtaagaataagcaaaagccatctatttagatttcaaccaaaggaaggaatgcagcttcactttttcaatg 7447187  T
Q  189 ag 190  Q
    ||    
T  7447188 ag 7447189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 71 - 313
Target Start/End: Original strand, 29071256 - 29071498
Alignment:
Q  71 ttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattc 170  Q
    |||||| | |||| ||| |||| ||||||| ||| ||||||| ||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||      
T  29071256 ttacatgataacatccatacaatgaatggggtgtttccaccaatcgtgataagtataaacaaaagccacctgtttcgatttcaaccaaaggaataaatgg 29071355  T
Q  171 aactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaa 270  Q
    |  || |||||||||||||||||||| ||||  |||| ||| || || |||| | |||||||||| |||||||||| |||||||| | | ||||| ||||    
T  29071356 agtttaactttttcaatgagagtaaaaggagatgaaatcgtattttggaaaacctggttattcctttccttccaaagcacccaaatagtggcaaatcaaa 29071455  T
Q  271 taatcctgaaaaataagtgtggaaataacggcatgcccgccat 313  Q
    |||||||||| ||| | || | | | |||||||| ||||||||    
T  29071456 taatcctgaagaatgattgagtagagaacggcatacccgccat 29071498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 71 - 313
Target Start/End: Original strand, 29103829 - 29104071
Alignment:
Q  71 ttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattc 170  Q
    |||||| | |||| ||| |||| ||||||| ||| ||||||| ||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||      
T  29103829 ttacatgataacatccatacaatgaatggggtgtttccaccaatcgtgataagtataaacaaaagccacctgtttcgatttcaaccaaaggaataaatgg 29103928  T
Q  171 aactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaa 270  Q
    |  || |||||||||||||||||||| ||||  |||| ||| || || |||| | |||||||||| |||||||||| |||||||| | | ||||| ||||    
T  29103929 agtttaactttttcaatgagagtaaaaggagatgaaatcgtattttggaaaacctggttattcctttccttccaaagcacccaaatagtggcaaatcaaa 29104028  T
Q  271 taatcctgaaaaataagtgtggaaataacggcatgcccgccat 313  Q
    |||||||||| ||| | || | | | |||||||| ||||||||    
T  29104029 taatcctgaagaatgattgagtagagaacggcatacccgccat 29104071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 19229348 - 19229514
Alignment:
Q  71 ttacataagaacac--ccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaat 168  Q
    ||||||||||||||  ||| | ||| |||||| ||| | |||| |||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||    
T  19229348 ttacataagaacacacccatataaaaaatggggtgttttcaccggtcgtggtaactataagcaaaagccacttgttttgatttcaaccataagaatgaat 19229447  T
Q  169 tcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcct 235  Q
    | ||||||||||||| || |||||| || ||||| || ||||| || ||||| |||||||| |||||    
T  19229448 tgaactttacttttttaacgagagtgaaaggagtggataccgtattttgaaatatccggttgttcct 19229514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 327
Target Start/End: Original strand, 18780623 - 18780868
Alignment:
Q  82 cacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttacttt 181  Q
    |||||| ||||||||| || ||| ||||||| ||||||||| ||||  ||||||||| |||||| ||||||| ||| | |||  |||  | ||| |||||    
T  18780623 cacccatacaaagaattgggtgtttccaccaatcgtggtaagtataggcaaaagccatctgtttagatttcagccaaaggaaggaatggagcttcacttt 18780722  T
Q  182 ttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaa 281  Q
    ||||||||||| |||| | | |||| || | || ||||| | ||| ||| |||| |||||||||| |||||||| | || |||||||||||||| |||||    
T  18780723 ttcaatgagagaaaagtgtgaagaagccatattttgaaatacccgattaatcctatccttccaaagcacccaaatatttacaaaccaaataatcttgaaa 18780822  T
Q  282 aataagtgtggaaataacggcatgcccgccatcttggtgaattgag 327  Q
    ||||| || | | |    ||||||||||||||||| ||||| ||||    
T  18780823 aataaatgagaataggttggcatgcccgccatcttagtgaactgag 18780868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 19230121 - 19230188
Alignment:
Q  230 attcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaataagtgtggaaata 297  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||| |||||    
T  19230121 attcatctccttccaaatcacccaaacacttgcaaaccaaataattctgaagaataaatgtgaaaata 19230188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 271
Target Start/End: Original strand, 3296884 - 3297053
Alignment:
Q  102 tgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgagagtaaagggag 201  Q
    ||||||||||| || |||||| ||||| | || ||||| ||||| ||||||| |||||||||| |||| | ||| ||||| ||||||||  |  | |||     
T  3296884 tgtctccaccaatcatggtaagtataagctaaggccacatgtttagatttcagccataagaatgaatttagcttgactttctcaatgagtattgaaggat 3296983  T
Q  202 tagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    | || | ||| || || || |  || ||||||| ||||||||| |||||||||||| |||||||||||||    
T  3296984 tggatatcgtattttggaagacacgattattccgctccttccatatcacccaaacagttgcaaaccaaat 3297053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 24395743 - 24395702
Alignment:
Q  230 attcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  24395743 attcctttccttccaaatcacccaaacagttgcaaaccaaat 24395702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 18970902 - 18970943
Alignment:
Q  230 attcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  18970902 attcctttccttccaaatcacctaaacagttgcaaaccaaat 18970943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 9856416 - 9856456
Alignment:
Q  240 ttccaaatcacccaaacaattgcaaaccaaataatcctgaa 280  Q
    |||||||||||||| |||  |||||||||||||||||||||    
T  9856416 ttccaaatcacccagacagctgcaaaccaaataatcctgaa 9856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 21605321 - 21605361
Alignment:
Q  231 ttcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  21605321 ttcctttccttccaaatcacccaaacagatgcaaaccaaat 21605361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 280
Target Start/End: Original strand, 25352450 - 25352664
Alignment:
Q  66 aaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaata 165  Q
    |||| ||||||||  ||||||| ||||  |||||| ||| ||||||  | || || | |||||| ||||||||||| ||||||||||||||| | ||||     
T  25352450 aaaaattacataatcacacccatacaataaatggggtgtttccacctcttgttgtgagtataaataaaagccacctatttcgatttcaaccaaaggaatg 25352549  T
Q  166 aattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaa 265  Q
    |||  ||  | |||||||||||||||||||| ||||  |||| | | || ||||||||||| | ||||||  ||||||||| |||||||| |||||||||    
T  25352550 aatgaaatctaactttttcaatgagagtaaaaggagatgaaatcatattttgaaaaatccgatcattccttcccttccaaagcacccaaataattgcaaa 25352649  T
Q  266 ccaaataatcctgaa 280  Q
    |||||| ||||||||    
T  25352650 ccaaattatcctgaa 25352664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 277
Target Start/End: Complemental strand, 16160381 - 16160223
Alignment:
Q  119 gtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatga 218  Q
    |||||||||  |||| ||||||||||| ||||||| ||||||||||  ||  | ||| | ||| ||||||||| |||| ||||| || || || || |||    
T  16160381 gtaactataggcaaaggccacctgtttggatttcagccataagaatggatgaagcttaattttatcaatgagaataaaaggagtggacactgtattttga 16160282  T
Q  219 aaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcct 277  Q
    || |  ||||| ||| | || |||||||||||||||||| ||||||||||||| |||||    
T  16160281 aatacacggttgttcatttctttccaaatcacccaaacagttgcaaaccaaattatcct 16160223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 81 - 314
Target Start/End: Complemental strand, 14207465 - 14207232
Alignment:
Q  81 acacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactt 180  Q
    ||||||| |||| | ||||  ||| |||||| |||||| ||| | ||| |||||||| ||||||| ||||||||||| |||||  |||  ||||||||||    
T  14207465 acacccatacaagggatggagtgtttccaccggtcgtgataagtgtaagcaaaagccgcctgtttagatttcaaccaaaagaaggaatgaaactttactt 14207366  T
Q  181 tttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaa 280  Q
    |||||||||||  ||| | ||||||| |||| || ||||||| | |||| ||||| |||||| ||  |||||||| | |  |||||||||||||||||||    
T  14207365 tttcaatgagaacaaaagaagtagaacccgtattttgaaaaacctggttgttcctttccttctaaggcacccaaatattaacaaaccaaataatcctgaa 14207266  T
Q  281 aaataagtgtggaaataacggcatgcccgccatc 314  Q
     ||||| |||| | |||  ||||| |||||||||    
T  14207265 gaataaatgtgaagatattggcattcccgccatc 14207232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 211
Target Start/End: Complemental strand, 41159571 - 41159443
Alignment:
Q  83 acccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttt 182  Q
    ||||| |||||||||||| ||| ||||||| ||||||||| ||||| |||||| ||| ||||| ||||||| ||| | |||  |||  | ||| ||||||    
T  41159571 acccatacaaagaatggggtgtttccaccaatcgtggtaattataagcaaaagtcacatgtttagatttcagccaaaggaaagaatgaagcttcactttt 41159472  T
Q  183 tcaatgagagtaaagggagtagaaaccgt 211  Q
    |||| |||| | ||| |||||||||||||    
T  41159471 tcaaagagaatgaagtgagtagaaaccgt 41159443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 33568653 - 33568718
Alignment:
Q  216 tgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaa 281  Q
    ||||| || ||||||||||| ||||||||||| ||||||||  | |||||||||||||||||||||    
T  33568653 tgaaatattcggttattcctatccttccaaatgacccaaactgtggcaaaccaaataatcctgaaa 33568718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 280
Target Start/End: Complemental strand, 31404055 - 31403955
Alignment:
Q  180 ttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctga 279  Q
    |||||||| |||||||| ||| |||| |||||  | || || |  ||||||||||| ||||||||||||| ||||||  ||||||||||||| |||||||    
T  31404055 ttttcaattagagtaaaaggattagataccgtagtttggaatacgcggttattcctatccttccaaatcatccaaacggttgcaaaccaaattatcctga 31403956  T
Q  280 a 280  Q
    |    
T  31403955 a 31403955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 38158305 - 38158249
Alignment:
Q  108 caccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaat 164  Q
    |||||||||||||||||||||||||||   |||||||| | ||||||||||||||||    
T  38158305 caccagtcgtggtaactataaacaaaattaacctgtttagttttcaaccataagaat 38158249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 46269208 - 46269275
Alignment:
Q  216 tgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaa 283  Q
    ||||||| ||| |||||||| ||||||||||||||||||| | | | ||||||||||| |||||||||    
T  46269208 tgaaaaacccgattattcctttccttccaaatcacccaaatagtggtaaaccaaataaccctgaaaaa 46269275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 23756778 - 23756863
Alignment:
Q  60 aagaataaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgttt 145  Q
    ||||| |||| ||||| |||| ||||||  |||||| || | ||||||||||| |||||  || ||||||||||||||||||||||    
T  23756778 aagaacaaaaattacaaaagagcacccatgcaaagagtgagatgtctccaccaatcgtgaaaagtataaacaaaagccacctgttt 23756863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 47671401 - 47671316
Alignment:
Q  66 aaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgattt 151  Q
    |||| ||||||||||||||||| ||||||||  || ||| ||||||| |||||||||  ||||||||||  | ||||||| |||||    
T  47671401 aaaaattacataagaacacccatacaaagaacagggtgtttccaccaatcgtggtaagaataaacaaaattcgcctgtttagattt 47671316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 283
Target Start/End: Complemental strand, 48242292 - 48242237
Alignment:
Q  228 ttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaa 283  Q
    |||||| | ||||||||||||||||||| | | ||||||||||||| |||||||||    
T  48242292 ttattcttttccttccaaatcacccaaatagtggcaaaccaaataaccctgaaaaa 48242237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Original strand, 22157822 - 22157868
Alignment:
Q  225 cggttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    ||||| ||||| |||||||||||||||||||||  ||||||||||||    
T  22157822 cggttgttcctttccttccaaatcacccaaacagatgcaaaccaaat 22157868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 6043684 - 6043733
Alignment:
Q  96 atgggttgtctccaccagtcgtggtaactataaacaaaagccacctgttt 145  Q
    ||||| ||| |||||||||||||||||  |||||||||| ||||||||||    
T  6043684 atggggtgtttccaccagtcgtggtaagaataaacaaaatccacctgttt 6043733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 81533 - 81645
Alignment:
Q  78 agaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaacttta 177  Q
    |||||||||| ||||  |||| | ||| ||||||||||||| ||  ||||| || ||||||||||||| ||  ||||||||||| |  ||||  ||||||    
T  81533 agaacacccatacaagaaatgaggtgtttccaccagtcgtgctatgtataagcagaagccacctgtttagacctcaaccataagtaagaattatacttta 81632  T
Q  178 ctttttcaatgag 190  Q
    || |||| |||||    
T  81633 ctatttcgatgag 81645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 45813902 - 45813958
Alignment:
Q  108 caccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaat 164  Q
    ||||||||||||||||||||| |||||   || ||||| | ||||||||||||||||    
T  45813902 caccagtcgtggtaactataagcaaaattaacttgtttagttttcaaccataagaat 45813958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 80 - 280
Target Start/End: Original strand, 13807878 - 13808078
Alignment:
Q  80 aacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttact 179  Q
    |||||||| |||||||||| | ||| ||||||| || || ||||||||| | || ||||| ||||| |||||||||||||| ||  |||| |||||||||    
T  13807878 aacacccatacaaagaatgaggtgtttccaccaatcatgataactataagcgaacgccacatgttttgatttcaaccataaaaaggaatttaactttact 13807977  T
Q  180 ttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctga 279  Q
    | ||||||||||| | | ||||  ||||  || || || || | || ||| |||   ||||||||||||| ||||||| |||||||||||||||||||||    
T  13807978 tgttcaatgagagaagaaggagcggaaagtgtattttggaatacccagttgttcaattccttccaaatcatccaaacagttgcaaaccaaataatcctga 13808077  T
Q  280 a 280  Q
    |    
T  13808078 a 13808078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 316
Target Start/End: Complemental strand, 13761013 - 13760835
Alignment:
Q  137 cacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctc 236  Q
    ||||||||| |||||||||||||||||| |||| | ||| ||||||||||||||| ||||  || ||||||| || || ||||| |  |||||||||||     
T  13761013 cacctgttttgatttcaaccataagaatgaatttagcttaactttttcaatgagaataaaaaga-tagaaactgtattttgaaagacacggttattcctt 13760915  T
Q  237 tccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaataagtgtggaaataacggcatgcccgccatctt 316  Q
    ||||| || |||||||||||| | ||||||||||| ||||| |  ||||| || | ||||   |||||||||||||||||    
T  13760914 tcctttcatatcacccaaacagtagcaaaccaaattatccttaggaataaatgagaaaatcttggcatgcccgccatctt 13760835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 43883964 - 43884031
Alignment:
Q  216 tgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaa 283  Q
    ||||||| ||| |||||||| ||||||||||||||||||| | | ||||||||||||| ||| |||||    
T  43883964 tgaaaaacccgattattcctttccttccaaatcacccaaatagtggcaaaccaaataaccctaaaaaa 43884031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 19480659 - 19480743
Alignment:
Q  79 gaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaa-agccacctgtttcgatttcaaccataagaa 163  Q
    ||||||||| |||||||| ||| ||| |||||||||| |||||||| |||  ||| |||| ||||||| |||||||||||||||||    
T  19480659 gaacacccatacaaagaaggggatgtttccaccagtcatggtaactgtaactaaatagcc-cctgttttgatttcaaccataagaa 19480743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 1718361 - 1718297
Alignment:
Q  216 tgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaa 280  Q
    ||||||| ||| |||||||| ||||||||||||||| ||| | | ||||||||||||| ||||||    
T  1718361 tgaaaaacccgattattcctttccttccaaatcacctaaatagtggcaaaccaaataaccctgaa 1718297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 286
Target Start/End: Complemental strand, 6803008 - 6802788
Alignment:
Q  66 aaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaata 165  Q
    |||| ||||||||||||||||| ||||||||  || ||| ||||||| |||||||||  |||| |||||  ||||  ||| ||||| | ||| | |||      
T  6803008 aaaaattacataagaacacccatacaaagaacagggtgtttccaccaatcgtggtaagaataagcaaaattcaccaatttagatttaagccaaaggaagg 6802909  T
Q  166 aattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaa 265  Q
    ||| |||||| || || || || ||||| ||   | | ||||||||  ||| ||| ||| | || ||||| ||||||||||||||||||| | |  ||||    
T  6802908 aatgcaacttcaccttctctataagagtcaaattattggaaaccgtactattaaatatctgattgttcctttccttccaaatcacccaaatagtgacaaa 6802809  T
Q  266 ccaaataatcctgaaaaataa 286  Q
    |||||||||| |||| |||||    
T  6802808 ccaaataatcgtgaagaataa 6802788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 29802722 - 29802594
Alignment:
Q  66 aaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaata 165  Q
    |||| ||||||||||||||||| | ||||||  || |||| |||| |||| || |||| | || |||  |  || || ||||||||||||||||| ||      
T  29802722 aaaaattacataagaacacccatataaagaagcgggtgtcaccactagtcatgataacaaaaagcaatcggaacttgattcgatttcaaccataaaaagg 29802623  T
Q  166 aattcaactttactttttcaatgagagta 194  Q
    |||||||||| ||||| ||||||||||||    
T  29802622 aattcaacttaactttatcaatgagagta 29802594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 49146408 - 49146368
Alignment:
Q  240 ttccaaatcacccaaacaattgcaaaccaaataatcctgaa 280  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  49146408 ttccaaatcacccaaacagttgcaaacaaaataatcctgaa 49146368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 9598637 - 9598592
Alignment:
Q  226 ggttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||| ||||| |||||||||||||||||||||  ||||||||||||    
T  9598637 ggttgttcctttccttccaaatcacccaaacagatgcaaaccaaat 9598592  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 9826208 - 9826163
Alignment:
Q  226 ggttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||| ||||| |||||||||||||||||||||  ||||||||||||    
T  9826208 ggttgttcctttccttccaaatcacccaaacagatgcaaaccaaat 9826163  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 26159774 - 26159689
Alignment:
Q  106 tccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgaga 191  Q
    |||||||||| || |||||||||  ||| | ||| ||||  ||||||||||| |||||| |||| | ||| |||||||||||||||    
T  26159774 tccaccagtcatgataactataactaaatgacacatgttatgatttcaaccacaagaatgaatttagcttaactttttcaatgaga 26159689  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 106 - 286
Target Start/End: Original strand, 3159566 - 3159746
Alignment:
Q  106 tccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaa-ctttactttttcaatgagagtaaagggagtag 204  Q
    |||||||||||||||||   ||| |||||||  ||||||| ||||||| ||| ||||| | ||| || |||||||||||||||||||  ||| | ||| |    
T  3159566 tccaccagtcgtggtaagcgtaatcaaaagcagcctgtttagatttcagccaaaagaa-agattgaagctttactttttcaatgagaacaaaagaagtgg 3159664  T
Q  205 aaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaataa 286  Q
    || | || || ||||| | |||||||||||| |||||||||| |||||||| | | |||||||||||||||||||| |||||    
T  3159665 aaccagtattttgaaatacccggttattcctttccttccaaagcacccaaatagtggcaaaccaaataatcctgaagaataa 3159746  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 286
Target Start/End: Complemental strand, 38394966 - 38394746
Alignment:
Q  66 aaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaata 165  Q
    |||| ||||| | ||||||||  ||||||||| |  ||| ||||||| ||||||||| ||||  |||||||||||||||| ||||||| ||| | |||      
T  38394966 aaaaattacaaacgaacacccgtacaaagaattgagtgtttccaccaatcgtggtaagtataggcaaaagccacctgtttagatttcatccaaaggaagg 38394867  T
Q  166 aattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaa 265  Q
    |||  | ||| ||||||||||||||||||||  | |||||| ||   || ||||| | |||  | ||||| ||||||||||  | ||||| | |  ||||    
T  38394866 aatgaagcttcactttttcaatgagagtaaattgtgtagaagccaaattttgaaatacccgactgttcctttccttccaaaggatccaaatagtaacaaa 38394767  T
Q  266 ccaaataatcctgaaaaataa 286  Q
    |||||||||| ||||||||||    
T  38394766 ccaaataatcttgaaaaataa 38394746  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 43858280 - 43858347
Alignment:
Q  216 tgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaa 283  Q
    ||||||| ||| |||||||| ||||||||||||||||||| | | ||||||||||||| |||||||||    
T  43858280 tgaaaaacccgattattcctttccttccaaatcacccaaatagtggcaaaccaaataaccctgaaaaa 43858347  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 47746376 - 47746470
Alignment:
Q  228 ttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaataagtgtggaaataacggcatgcccgccatcttggtgaa 322  Q
    |||||| | ||||||||||||||| ||||| | ||||||||||||||||||||| |||| || | ||| |  ||||| ||||||||||| |||||    
T  47746376 ttattcatttccttccaaatcacctaaacagtggcaaaccaaataatcctgaaatataactgagtaaaaagaggcattcccgccatcttagtgaa 47746470  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 10927179 - 10927136
Alignment:
Q  228 ttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  10927179 ttattcctctccttccaaatcacccaaacagttgcaaatcaaat 10927136  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 271
Target Start/End: Complemental strand, 53505633 - 53505588
Alignment:
Q  226 ggttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||    
T  53505633 ggttattcctctccttccaaataacccaaacaacagcaaaccaaat 53505588  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 41226595 - 41226543
Alignment:
Q  108 caccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataa 160  Q
    |||||||||||||||||||||||||||   |||||||| | ||||||||||||    
T  41226595 caccagtcgtggtaactataaacaaaattaacctgtttagttttcaaccataa 41226543  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 11874398 - 11874440
Alignment:
Q  216 tgaaaaatccggttattcctctccttccaaatcacccaaacaa 258  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||    
T  11874398 tgaaaaattcggttgttcctctccttccaaatcacccacacaa 11874440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 15206089 - 15206043
Alignment:
Q  225 cggttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    ||||| ||||| |||||||||||||||||||||  ||||||||||||    
T  15206089 cggttgttcctttccttccaaatcacccaaacagatgcaaaccaaat 15206043  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 18992132 - 18992050
Alignment:
Q  106 tccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgaga 191  Q
    |||||||||||||||||||||   |||| ||||||| ||| |||||||||||||||||| |||| |||||||||||||| ||||||    
T  18992132 tccaccagtcgtggtaactat---caaaggccacctatttagatttcaaccataagaatgaatttaactttactttttcgatgaga 18992050  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 255
Target Start/End: Original strand, 48489116 - 48489305
Alignment:
Q  66 aaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaata 165  Q
    |||| |||||||| |||||||| |||  | ||||| ||| |||||||||||||||||   ||| |||||||   |||||| ||||||| ||| | |||      
T  48489116 aaaaattacataataacacccatacacgggatggggtgtttccaccagtcgtggtaagcgtaatcaaaagcagtctgtttagatttcagccaaaggaaag 48489215  T
Q  166 aattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaa 255  Q
    |||| | |||||||||||||||||||  ||| | ||| ||| |||| || ||||| | |||||| || || |||||||||| ||||||||    
T  48489216 aattaagctttactttttcaatgagaacaaaagaagtggaacccgtattttgaaatacccggttgtttctttccttccaaagcacccaaa 48489305  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 286
Target Start/End: Original strand, 12376823 - 12377043
Alignment:
Q  66 aaaatttacataagaacacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaata 165  Q
    |||| ||||||||||||||||| ||||||||  || ||| ||||||| |||||||||  |||| |||||  | ||||||| ||||| | ||| | |||      
T  12376823 aaaaattacataagaacacccatacaaagaacagggtgtttccaccaatcgtggtaagaataagcaaaattcgcctgtttagatttaagccaaaggaagg 12376922  T
Q  166 aattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaa 265  Q
    ||| || ||| || || || ||  |||||||   | ||||||||||  ||| ||| ||||| || ||||| ||||||||||||||||||| | |  ||||    
T  12376923 aatgcagcttcaccttctctatatgagtaaaattattagaaaccgtactattaaatatccgattgttcctttccttccaaatcacccaaatagtgacaaa 12377022  T
Q  266 ccaaataatcctgaaaaataa 286  Q
    |||||||||| |||| |||||    
T  12377023 ccaaataatcgtgaagaataa 12377043  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 53480776 - 53480831
Alignment:
Q  228 ttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaa 283  Q
    |||||||| ||||||||||||||||||| | | ||||||||||||| |||||||||    
T  53480776 ttattcctttccttccaaatcacccaaatagtggcaaaccaaataaccctgaaaaa 53480831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 41148011 - 41147925
Alignment:
Q  106 tccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgagag 192  Q
    ||||||| ||||| ||| ||||| |||| |  |||||||| |||||||||||||||||| |||| || || || |||||||||||||    
T  41148011 tccaccaatcgtgataattataagcaaatgtgacctgtttagatttcaaccataagaatgaatttaatttaaccttttcaatgagag 41147925  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 273
Target Start/End: Original strand, 3693116 - 3693251
Alignment:
Q  135 gccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcc 234  Q
    |||||||| || |||||||||||||||||  |||| | ||| || ||||||| |||| |||  ||||| ||||||||||| || || |  || ||||| |    
T  3693116 gccacctgattagatttcaaccataagaaagaattaaccttaaccttttcaa-gagaataa--ggagtggaaaccgtgttttggaatacacgattatttc 3693212  T
Q  235 tctccttccaaatcacccaaacaattgcaaaccaaataa 273  Q
    ||| |||||||||  |||||| | |||||||||||||||    
T  3693213 tcttcttccaaattgcccaaatagttgcaaaccaaataa 3693251  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 255
Target Start/End: Original strand, 11581185 - 11581359
Alignment:
Q  81 acacccaaacaaagaatgggttgtctccaccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactt 180  Q
    ||||||| |||||||||| | ||| ||||||| || ||||| ||||||   || || || |||||  ||||||||||||| ||| |||| | ||| |||     
T  11581185 acacccatacaaagaatgagatgtttccaccaatcatggtagctataattgaacgctacatgtttaaatttcaaccataacaatgaatttaccttaactc 11581284  T
Q  181 tttcaatgagagtaaagggagtagaaaccgtgttatgaaaaatccggttattcctctccttccaaatcacccaaa 255  Q
    |||||| ||||| | | ||||| ||||  ||||| || || |  | ||||||||| ||||||||||||| |||||    
T  11581285 tttcaaggagagaataaggagtggaaattgtgttttggaatacacagttattcctttccttccaaatcatccaaa 11581359  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 2473527 - 2473583
Alignment:
Q  108 caccagtcgtggtaactataaacaaaagccacctgtttcgatttcaaccataagaat 164  Q
    |||||||||  |||||||||| ||||| |  ||||||| ||||||||||||||||||    
T  2473527 caccagtcgcagtaactataagcaaaatcagcctgtttagatttcaaccataagaat 2473583  T

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Target: scaffold0259 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 271
Target Start/End: Complemental strand, 4228 - 4076
Alignment:
Q  119 gtaactataaacaaaagccacctgtttcgatttcaaccataagaataaattcaactttactttttcaatgagagtaaagggagtagaaaccgtgttatga 218  Q
    ||||||||| || |||||| | ||||| |||||||||||||||||| |||  ||||| | ||| |||||||||  ||| ||||  || ||||| || |||    
T  4228 gtaactatatacgaaagccgcttgtttagatttcaaccataagaatgaatgaaacttaattttatcaatgagaacaaaaggagcggataccgtattttga 4129  T
Q  219 aaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||    |||| ||||| || ||||||||||| |||| | |||||||||||||    
T  4128 aaaggatggttgttcctttctttccaaatcactcaaatagttgcaaaccaaat 4076  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 218253 - 218174
Alignment:
Q  207 accgtgttatgaaaaatccggttattcctctccttccaaatcacccaaacaattgcaaaccaaataatcctgaaaaataa 286  Q
    ||||| || |||||||  |||||||||||||||||||||||| |||||| | | |  |||||||||||||| ||| ||||    
T  218253 accgtattttgaaaaacacggttattcctctccttccaaatctcccaaatagtagataaccaaataatcctaaaatataa 218174  T

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Target: scaffold0074 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 25827 - 25786
Alignment:
Q  230 attcctctccttccaaatcacccaaacaattgcaaaccaaat 271  Q
    |||||| ||||||||||||| ||||||| |||||||||||||    
T  25827 attcctttccttccaaatcatccaaacagttgcaaaccaaat 25786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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