View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16996_high_18 (Length: 311)
Name: NF16996_high_18
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_18 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 31564620 - 31564316
Alignment:
| Q |
1 |
atccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctcttttacat------gtaaaaattgaaatacatgtata |
94 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31564620 |
atccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacatgtaaaaattgaaatacatgtata |
31564521 |
T |
|
| Q |
95 |
aattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcct |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31564520 |
aattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatgaaattgaaaccattactcgagcct |
31564421 |
T |
|
| Q |
191 |
ttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgtactacca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31564420 |
ttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgtactacca |
31564321 |
T |
|
| Q |
291 |
caggt |
295 |
Q |
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||||| |
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| T |
31564320 |
caggt |
31564316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 200
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
| Q |
36 |
aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt |
133 |
Q |
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|||||||||||||| | || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| | |
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| T |
33416366 |
aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat |
33416465 |
T |
|
| Q |
134 |
agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag |
200 |
Q |
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|||||||| ||||| |||| ||||||||||||||||| |||||| ||||||||||||| ||||||| |
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| T |
33416466 |
agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag |
33416536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 157 - 286
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
| Q |
157 |
aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc |
255 |
Q |
| |
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|||||||||||||||| |||| || ||| |||||| ||||| | ||||| ||||||||||||||||| ||||||| | ||||||||| | | |||| |
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| T |
33385707 |
aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc |
33385806 |
T |
|
| Q |
256 |
aattgcaacttcttcatcttcaacttgtact |
286 |
Q |
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|||||||||||||||| |||||||||||||| |
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| T |
33385807 |
aattgcaacttcttcaccttcaacttgtact |
33385837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
| Q |
212 |
gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca |
271 |
Q |
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| T |
33281320 |
gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca |
33281376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 283
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
| Q |
229 |
agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt |
283 |
Q |
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|||||||||| ||||||| || |||||||||||||| ||||||||||||||||| |
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|
| T |
33416538 |
agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt |
33416592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
| Q |
212 |
gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca |
271 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||| ||||| |||||| |
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| T |
33301947 |
gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca |
33302003 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 191
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
| Q |
37 |
aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga |
136 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| || |
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| T |
30653360 |
aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga |
30653262 |
T |
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| Q |
137 |
aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt |
191 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |
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| T |
30653261 |
aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt |
30653203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 283
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
| Q |
154 |
agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat |
253 |
Q |
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||||||||||||||||||| |||| || || |||||| ||||||| ||||||| ||||||||||||||| ||||||| | |||||||| || || |
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| T |
17443503 |
agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat |
17443404 |
T |
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| Q |
254 |
gcaattgcaacttcttcatcttcaacttgt |
283 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
17443403 |
gcaattgcaacttcttcacgttcaacttgt |
17443374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
| Q |
212 |
gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca |
271 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||||||||||||||| |||||| |
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|
| T |
12932 |
gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca |
12876 |
T |
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