View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16996_high_1_N (Length: 694)
Name: NF16996_high_1_N
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 31 - 372
Target Start/End: Complemental strand, 32856328 - 32855987
Alignment:
| Q |
31 |
aatgacaaaggttagtaattagttgttaaatttagatctatttctttgtccacgttcgaacccagaacccccaactctttctctcttaactcaaagcaag |
130 |
Q |
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| T |
32856328 |
aatgacaaaggttagtaattagttgttaaatttagatctatttctctgtccacgttcgaacccagaacccccaactctttctctcttaactcaaagcaag |
32856229 |
T |
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| Q |
131 |
agctatccaaccctctctcatccgtggtttctaatttggggaaaatgttagattagaaatagattaaaaagtgtatctgtttctacataaattgtgcaga |
230 |
Q |
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| T |
32856228 |
agctatccaaccctctctcatccgtggtttctaatttggggaaaatgttagattagaaatagattaaaaagtgtatctgtttctacataaattgtgcaga |
32856129 |
T |
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| Q |
231 |
aattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtagtagccacagagtgcagaacagttacagtgctttgaagatannnnnnnn |
330 |
Q |
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| T |
32856128 |
aattaaagtgtgatttctttccaaagagagatgatttattgggtgacggtagtagccacagagtgcagaacagttacagtgctttgaagatattttcttt |
32856029 |
T |
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| Q |
331 |
nnnnnnnncttccagctggagatattatcttagttcaaaggg |
372 |
Q |
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| T |
32856028 |
ttgtttttcttccagctggagatattatcttagttcaaaggg |
32855987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 406 - 675
Target Start/End: Complemental strand, 32855953 - 32855684
Alignment:
| Q |
406 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
505 |
Q |
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| T |
32855953 |
agggaaaaataaaactacaagcgtgggagatgtggtcttgcactgcacacattcctgctttcctgttgttgcatttagtaacctttggccaccccaacag |
32855854 |
T |
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| Q |
506 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttaattgatgtg |
605 |
Q |
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| T |
32855853 |
gtagcacttgatattttcagctggaaaggacctgagtatcagaatgactaatgatgatttgagcatgtagagcagggtaactcttctcttgattgatgtg |
32855754 |
T |
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| Q |
606 |
agcttttaaactttataatacagtctcaaagcaaatcacaattcaacaccagacacgccccggattccac |
675 |
Q |
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| T |
32855753 |
agcttttaaactttataatacagtctcaaaacaaatcacaattcaacaccagacacgccccggattccac |
32855684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 471 - 656
Target Start/End: Complemental strand, 32850489 - 32850285
Alignment:
| Q |
471 |
ttgttgcatttagtaacctttggccaccccaacaggtagcacttgatattttcagctggaaaggacctga--------------gtatcagaatgactaa |
556 |
Q |
| |
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|||||||| |||||||| ||| || |||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||| |
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| T |
32850489 |
ttgttgcacttagtaacttttagcaaccccaacaggtagcagttggtattttcagctggaaaggacctgataatccctaaagttgtatcagcatgactaa |
32850390 |
T |
|
| Q |
557 |
tgatgatttgagcatgtagag--------cagggtaactcttctcttaattgatgtgagcttttaaactttataatacagtctcaaagcaaatcacaatt |
648 |
Q |
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|||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32850389 |
tgat---ttgagcatgtagaggcgtagagcagggtaactcttctctcaattgatgtgagcttttaaactttataatacagtctcaaaacaaatcacaatt |
32850293 |
T |
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| Q |
649 |
caacacca |
656 |
Q |
| |
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|||||||| |
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| T |
32850292 |
caacacca |
32850285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 32850766 - 32850670
Alignment:
| Q |
183 |
ttagaaatagattaaaaagtgtatctgtttctacataaattgtgcagaaattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtag |
282 |
Q |
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|||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||| | || |||||| |||||||||| | ||||| ||||| |
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| T |
32850766 |
ttagaaatagatgaaaaagtgtagctgtttctgcataaattgtgcag-----gaagtgtgattaccttgcaaagatagatgatttactaggtgacggtag |
32850672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 448
Target Start/End: Complemental strand, 32850561 - 32850520
Alignment:
| Q |
407 |
gggaaaaataaaactacaagcgtgggagatgtggtcttgcac |
448 |
Q |
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| T |
32850561 |
gggaaaaataaaactacaatcgtgggagatggggtcttgcac |
32850520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 32850625 - 32850592
Alignment:
| Q |
339 |
cttccagctggagatattatcttagttcaaaggg |
372 |
Q |
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| T |
32850625 |
cttccagctggagatattatcttagttcaaaggg |
32850592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 10223394 - 10223426
Alignment:
| Q |
30 |
taatgacaaaggttagtaattagttgttaaatt |
62 |
Q |
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| T |
10223394 |
taatgacaaatgttagtaattagttgttaaatt |
10223426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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