View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16996_high_2 (Length: 610)
Name: NF16996_high_2
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_2 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 564; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 23 - 610
Target Start/End: Complemental strand, 32062625 - 32062038
Alignment:
| Q |
23 |
catcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32062625 |
catcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccggtgcattctcttgcttcagtgaccttttctttctaacaaagtc |
32062526 |
T |
|
| Q |
123 |
tattggcttcccaaacatgttgtttatgtcatccattgcttccttcatgttgattgtggggtctactaaaccgtggtgacaagcattttccacctttggt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062525 |
tattggcttcccaaacatgttgtttatgtcatccattgcttccttcatgttgattgtggggtctactaaaccgtggtgacaagcattttccacctttggt |
32062426 |
T |
|
| Q |
223 |
tcatccaaaatggcagaaccaacaaatctacgaacaactgtatcttctctgaactttgaattatgagatttttgtgcatccatatccctagatttctcag |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062425 |
tcatccaaaatggcagaaccaacaaatctacgaacaactgtatcttctctgaactttgaattatgagatttttgtgcatccatatccctagatttctcag |
32062326 |
T |
|
| Q |
323 |
aaggaacatccttaggtcggggaaaaacaaagccatttacttttgaaactgatgaagtagaaccttctgaacgtccttcatcatcaatatgtatctggag |
422 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32062325 |
aaggaacatccttaggtcggggaaaaacaaagccatttacttttgaaactgatgaagtagaaccttctgaatgtccttcatcatcaatatgtatctggag |
32062226 |
T |
|
| Q |
423 |
tgattcttgttgaggtttgccaccttcattcctgtactgaagtgatgcggaaccgcttggtttattttctttatccaaattttcatcaacaaaaacttca |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062225 |
tgattcttgttgaggtttgccaccttcattcctgtgctgaagtgatgcggaaccgcttggtttattttctttatccaaattttcatcaacaaaaacttca |
32062126 |
T |
|
| Q |
523 |
aagttcgttgaactgcgattttcttttgaattgttcttatgtaatttcttgcccaaaggaacagtctctaatggctcactgaacatgc |
610 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32062125 |
aagttcattgaactgcaattttcttttgaattgttcttatgtaatttcttgcccaaaggaacagtctctaatggctcactgaacatgc |
32062038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 32062758 - 32062652
Alignment:
| Q |
25 |
tcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccagtgcattctcttgcttcaatgaccttttctttctaacaaagtcta |
124 |
Q |
| |
|
|||||||| ||||| || |||||||||| || |||||||||||| |||||| || |||| ||||| ||||||| | | ||||| || | |||||| |||| |
|
|
| T |
32062758 |
tcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccgaacaaaatcta |
32062659 |
T |
|
| Q |
125 |
ttggctt |
131 |
Q |
| |
|
||||||| |
|
|
| T |
32062658 |
ttggctt |
32062652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University