View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16996_high_20 (Length: 310)
Name: NF16996_high_20
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_20 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 166 - 310
Target Start/End: Original strand, 28447982 - 28448126
Alignment:
| Q |
166 |
tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgtcggaagttacggccttcaatcttttgttggagtggttgt |
265 |
Q |
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| T |
28447982 |
tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt |
28448081 |
T |
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| Q |
266 |
ctatttctataggcgtcaggcctacagacctcccctctacatcga |
310 |
Q |
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| T |
28448082 |
ctatttctataggcatcagacctacagacctcccctctacatcga |
28448126 |
T |
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 18690607 - 18690684
Alignment:
| Q |
169 |
gggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgtcggaagttacggccttcaat |
246 |
Q |
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| T |
18690607 |
gggctttggttggccttggcttcggtgttcctctctctgaggttcctagtttttgcgttggaagttacaaccttcaat |
18690684 |
T |
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