View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16996_high_22 (Length: 301)
Name: NF16996_high_22
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 34079766 - 34079653
Alignment:
| Q |
1 |
ggcttttccaaagaatcaagaaagtcagcatccatctcaatctcaggcccaaacacaacaattccagcagcttcttcagcatcagcactcattcactaat |
100 |
Q |
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| T |
34079766 |
ggcttttccaaagaatcaagaaagtcagcatccatctcaatctcaggcccaaacacaacaattccagcagcttcttcagcatcagcactcattcactaat |
34079667 |
T |
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| Q |
101 |
caaaattatcatat |
114 |
Q |
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|||||||||||||| |
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| T |
34079666 |
caaaattatcatat |
34079653 |
T |
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Target: chr8; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 34079558 - 34079488
Alignment:
| Q |
224 |
gttgtagatcatcaacagatgtcaaatgccgtctccacaatgtctcagtttgtttccgcaccttcatctca |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34079558 |
gttgtagatcatcaacagatgtcaaatgccgtctccacaatgtctcagtttgtttccgcacctccatctca |
34079488 |
T |
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