View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16996_high_3 (Length: 418)
Name: NF16996_high_3
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 47 - 404
Target Start/End: Original strand, 33790832 - 33791189
Alignment:
| Q |
47 |
atttttaggaagctgcatatttatcttactctacacatatacttaccaaaatataaaatattttgtcatgaccaatttggttgatttagtttcaggggtg |
146 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33790832 |
atttttaggcagctgcatatttatcttactctacacatatacttaccaaaatatacaatattttgtcatgaccaatttggttgatttaatttcaggggtg |
33790931 |
T |
|
| Q |
147 |
tgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33790932 |
tgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaaccttactgtaagaggatataacctcatagatgaaatc |
33791031 |
T |
|
| Q |
247 |
aaaagaatcctagaaaatgcatgtccatcaacagtttcacgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagtt |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33791032 |
aaaagaatcctagaaaatgcatgtccatcaacagtttcatgtgcagacataatatcattagcaacaagagattctgttgtcttagcaggtggaccaagtt |
33791131 |
T |
|
| Q |
347 |
acaatgttcctacaggaagacgtgatggattagtatcaactgttgatgatgtccatct |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
33791132 |
acaatgttcctacaggaagacgtgatggattagtatcaactgttaatgatgtacatct |
33791189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 378
Target Start/End: Complemental strand, 33764212 - 33764098
Alignment:
| Q |
264 |
tgcatgtccatcaacagtttcacgtgcagacataatatcattagcaacaagagattcagttgtcttagcaggtggaccaagttacaatgttcctacagga |
363 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| || || | || ||||||||| | || | |||| | || ||||||| |||||| ||||||||||| |
|
|
| T |
33764212 |
tgcatgtccatcaacggtttcatgtgcagacatcgtagcacttgctacaagagatgctgtggccttatctggaggaccaaaatacaatattcctacagga |
33764113 |
T |
|
| Q |
364 |
agacgtgatggatta |
378 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
33764112 |
agacgtgacggatta |
33764098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University