View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16996_high_4 (Length: 402)
Name: NF16996_high_4
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 22 - 381
Target Start/End: Complemental strand, 17075755 - 17075396
Alignment:
| Q |
22 |
gacatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctc |
121 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| | |
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| T |
17075755 |
gacatcatcaaacacaaccttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctccc |
17075656 |
T |
|
| Q |
122 |
gaagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgg |
221 |
Q |
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||||||||| | | |||||||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| | ||| | || || |||||||| | |
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| T |
17075655 |
gaagaaaccacttttaccgcctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctag |
17075556 |
T |
|
| Q |
222 |
gcaaccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccg |
321 |
Q |
| |
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||| |||||||||||| |||| ||||| |||| || ||||||||||| ||||||||||||| ||| |||| || | |||||||| |||| ||||| |
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| T |
17075555 |
gcagccgcgccacctttttcagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccg |
17075456 |
T |
|
| Q |
322 |
caccactttcttaaccttctttcttgccgaagaaataacaccagcgactccatgatgatg |
381 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||| | |||| |||||| |
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| T |
17075455 |
caccactttcttaaccttcttccttgccgaagaaataacaccagcgtcaccattatgatg |
17075396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 149 - 381
Target Start/End: Complemental strand, 11053702 - 11053470
Alignment:
| Q |
149 |
agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa |
248 |
Q |
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||||| || |||||||||||||| ||||||||||||||||| || || | || ||||| ||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
11053702 |
agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa |
11053603 |
T |
|
| Q |
249 |
ataccggatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg |
347 |
Q |
| |
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|||| ||||||| || |||||||||||||||| || | | | || || ||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
11053602 |
tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg |
11053504 |
T |
|
| Q |
348 |
ccgaagaaataacaccagcgactccatgatgatg |
381 |
Q |
| |
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|||| ||||||||||||||| | ||||||||||| |
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| T |
11053503 |
ccgatgaaataacaccagcgtcaccatgatgatg |
11053470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 11064166 - 11064036
Alignment:
| Q |
23 |
acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg |
122 |
Q |
| |
|
|||||||||| ||| || ||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || |||||| || |
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|
| T |
11064166 |
acatcatcaaccactactttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccg |
11064067 |
T |
|
| Q |
123 |
aagaaaccgccctaaccgcctttttaagacg |
153 |
Q |
| |
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| |||||| || ||||| ||||||||||||| |
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| T |
11064066 |
aggaaaccaccttaaccacctttttaagacg |
11064036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 23 - 381
Target Start/End: Original strand, 17683905 - 17684263
Alignment:
| Q |
23 |
acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg |
122 |
Q |
| |
|
|||||||||| | | || ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| || |
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| T |
17683905 |
acatcatcaaccgctactttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccg |
17684004 |
T |
|
| Q |
123 |
aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctggg |
222 |
Q |
| |
|
| |||||| || | ||| ||||||||||||| || |||||||||||||| ||||||||||||||||| || || | |||||||| ||| |||||||| || |
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|
| T |
17684005 |
aggaaaccacctttaccacctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctagg |
17684104 |
T |
|
| Q |
223 |
caaccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcc---tcttt--ataactattgaactggatttagcaaaag |
317 |
Q |
| |
|
|||| |||||||||| |||||||||| |||| |||||||||| |||||||||||||||| | ||| | || ||| | | |||| || || |
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| T |
17684105 |
caactgcgccacctttttcaaactaatcaccgagtgccgcaaaaccccattcactttcttccgtttgtttgcacaaatatcggattgga-----aaatag |
17684199 |
T |
|
| Q |
318 |
gccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgactccatgatgatg |
381 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||| ||||||||||||||| | ||||||||||| |
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|
| T |
17684200 |
gccgcaccactttcctgaccttctttcttgccgatgaaataacaccagcgtcaccatgatgatg |
17684263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 36159902 - 36160061
Alignment:
| Q |
38 |
accttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaa |
137 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| |||||||| || | || || ||||| ||||||| ||| |||||| || || | | |
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| T |
36159902 |
accttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttca |
36160001 |
T |
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| Q |
138 |
ccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgca |
197 |
Q |
| |
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|||||||||| ||||||||||| || ||||||||||| | ||||||||||| |||||||| |
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| T |
36160002 |
ccgcctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgca |
36160061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 23 - 381
Target Start/End: Original strand, 26741535 - 26741893
Alignment:
| Q |
23 |
acatcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcg |
122 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| || |
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|
| T |
26741535 |
acatcatcaaccacaaccttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccg |
26741634 |
T |
|
| Q |
123 |
aagaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctggg |
222 |
Q |
| |
|
|||||||| |||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| | ||| |||| || ||||||| ||| |
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|
| T |
26741635 |
aagaaaccacccttacagccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcaggg |
26741734 |
T |
|
| Q |
223 |
caaccgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgc |
322 |
Q |
| |
|
|| ||| ||||||| |||||||||| ||||| | ||| || || ||||||||||||||| ||| |||| | | || |||| ||||| |||| || |
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|
| T |
26741735 |
cagccgatccacctttttcaaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgc |
26741834 |
T |
|
| Q |
323 |
accactttcttaaccttctttcttgccgaagaaataacaccagcgactccatgatgatg |
381 |
Q |
| |
|
||||| ||||||||||||| || ||||| |||||||||||||| | ||||||||||| |
|
|
| T |
26741835 |
gccactctcttaaccttcttcctagccgatgaaataacaccagcatcaccatgatgatg |
26741893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 25 - 288
Target Start/End: Complemental strand, 10560002 - 10559739
Alignment:
| Q |
25 |
atcatcaatcacaaccttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaa |
124 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| |||| |
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|
| T |
10560002 |
atcatcaactacaaccttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaa |
10559903 |
T |
|
| Q |
125 |
gaaaccgccctaaccgcctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcagaacggtggcccggtctttgctgggca |
224 |
Q |
| |
|
|||||| || | ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||| | |||||||| |||| |
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|
| T |
10559902 |
gaaaccacctttaccgcctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggca |
10559803 |
T |
|
| Q |
225 |
accgcgccaccttcttcaaactaaataccggatgccgcaaaattccattcactttcttcctctt |
288 |
Q |
| |
|
| || ||||||| |||||||||| |||| ||||||| || |||||||||||||||||||| |
|
|
| T |
10559802 |
gctgccccacctttttcaaactaatcaccgagtgccgcagaaacccattcactttcttcctctt |
10559739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 10558490 - 10558419
Alignment:
| Q |
311 |
gcaaaaggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgactccatgatgatgt |
382 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
10558490 |
gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcaccatgatgatgt |
10558419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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