View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16996_high_5 (Length: 383)
Name: NF16996_high_5
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16996_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 23 - 361
Target Start/End: Complemental strand, 52109113 - 52108778
Alignment:
| Q |
23 |
tcatcacgcaatgttaatgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaacaatttcaaacaattttagggttttac |
122 |
Q |
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| T |
52109113 |
tcatcacgcaatgttaatgtttccaagctaatttctcaccaattaaatccaaatccacttccaaatccccaaa---tttcaaacaattttagggttttac |
52109017 |
T |
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| Q |
123 |
tattcaatctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttc |
222 |
Q |
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| T |
52109016 |
tattcaatctctatggaacccaagattccaaatttccggaatacgagatgcctactgttacatggggtgtgattcaaggccgcaaagagaaactcgtttc |
52108917 |
T |
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| Q |
223 |
gcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgt |
322 |
Q |
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| T |
52108916 |
gcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccgttgaagtcatgagggaacgt |
52108817 |
T |
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| Q |
323 |
gttgagtttattcaaaaattagggttaacgattgatgat |
361 |
Q |
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| T |
52108816 |
gttgagtttattcagaaattagggttaacgattgatgat |
52108778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 97 - 361
Target Start/End: Complemental strand, 44520314 - 44520050
Alignment:
| Q |
97 |
aatttcaaacaattttagggttttactattcaatctctatggaacccaagattccaaatttcccgaatacgagatgcctactgttacatggggtgtgatt |
196 |
Q |
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| T |
44520314 |
aatttcaaacaattttagggttttattcttcaatctctatggaacccaagattccaaatttcctgaatacgagatgcctactgttacatggggtgtgatt |
44520215 |
T |
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| Q |
197 |
caaggccgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
296 |
Q |
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| T |
44520214 |
caaggtcgcaaagagaaactcgtttcgagggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttcctt |
44520115 |
T |
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| Q |
297 |
caaccgttgaagtcatgagggaacgtgttgagtttattcaaaaattagggttaacgattgatgat |
361 |
Q |
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| T |
44520114 |
caaccgttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgat |
44520050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 44520388 - 44520337
Alignment:
| Q |
39 |
atgtttctaagctaatttctcaccaattaaatccaaatccacttccaaatcc |
90 |
Q |
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| T |
44520388 |
atgtttctaagctaatttcacaccaattatatccaaatgcacttccacatcc |
44520337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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