View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16996_high_7 (Length: 370)

Name: NF16996_high_7
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16996_high_7
NF16996_high_7
[»] chr1 (4 HSPs)
chr1 (28-370)||(11780124-11780467)
chr1 (186-358)||(10424593-10424765)
chr1 (276-358)||(1624838-1624920)
chr1 (275-334)||(30731478-30731537)
[»] chr7 (1 HSPs)
chr7 (28-370)||(17158540-17158886)
[»] chr2 (1 HSPs)
chr2 (55-370)||(12101751-12102064)
[»] chr6 (4 HSPs)
chr6 (35-370)||(14977470-14977808)
chr6 (72-243)||(11776308-11776482)
chr6 (195-243)||(24353638-24353686)
chr6 (187-243)||(9352421-9352477)
[»] chr5 (4 HSPs)
chr5 (72-358)||(5781902-5782191)
chr5 (72-358)||(19069420-19069709)
chr5 (186-243)||(11724701-11724758)
chr5 (249-346)||(17763963-17764060)
[»] chr8 (1 HSPs)
chr8 (186-342)||(17459431-17459587)
[»] chr3 (6 HSPs)
chr3 (186-353)||(16311632-16311799)
chr3 (186-353)||(18488416-18488583)
chr3 (186-353)||(18492626-18492793)
chr3 (175-338)||(19829018-19829181)
chr3 (186-324)||(16314023-16314161)
chr3 (186-324)||(18495017-18495155)
[»] chr4 (3 HSPs)
chr4 (186-331)||(8667849-8667994)
chr4 (186-243)||(10692478-10692535)
chr4 (186-243)||(10906244-10906301)
[»] scaffold0015 (1 HSPs)
scaffold0015 (180-243)||(2963-3026)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 28 - 370
Target Start/End: Complemental strand, 11780467 - 11780124
Alignment:
Q  28 cagttgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctag 127  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  11780467 cagttgttacttctcatatgacggtccctatgcccaggacatcattgtcgtcaacatctttcagctttccactacataacgtgtttgacagcgtttctag 11780368  T
Q  128 tgaggagctgctactagctacgccagtgtttgaaattgtttcccgg-ttgcatgatgaagtgcattctgagagagcggagcagtcgcatccgacatcgcg 226  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  11780367 tgaggagctgctactagctacgccagtgtttgaaattgtttccccgattgcatgatgaaatgcattctgagagagtgaagcagtcgcatccgacatcgcg 11780268  T
Q  227 ggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccg 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11780267 ggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggagctggtggagagtccg 11780168  T
Q  327 aagggtgcccatgagcatgtaccacattcatcaattgttgagca 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11780167 aagggtgcccatgagcatgtaccacattcatcaattgttgagca 11780124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 186 - 358
Target Start/End: Complemental strand, 10424765 - 10424593
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    |||||||||||||||| ||| || | ||||| ||||||||||||||  ||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  10424765 gtgcattctgagagagtggaacaattgcatctgacatcgcgggaggtattggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 10424666  T
Q  286 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 358  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||||||||||||||    
T  10424665 aatataatcgttcgcgcccacgggagctggtggagagtcctaagggttcctacgagcgtgtaccacattcatc 10424593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 1624920 - 1624838
Alignment:
Q  276 gatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 358  Q
    |||||||||||||| |||  |||| |||| | ||| ||||| |||||||| |||||| |||| |||| |||||||||||||||    
T  1624920 gatgatgtggaacacaatagttcgagcccgcgggagctggtcgagagtcccaagggttcccacgagcgtgtaccacattcatc 1624838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 30731478 - 30731537
Alignment:
Q  275 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgc 334  Q
    ||||| |||||||||| |||||  | |||||||||| |||||||||||||| ||||||||    
T  30731478 ggatggtgtggaacatgatcatgtgagcccacaggagctggtggagagtcccaagggtgc 30731537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 28 - 370
Target Start/End: Complemental strand, 17158886 - 17158540
Alignment:
Q  28 cagttgttacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctag 127  Q
    ||||||||||||||||  |||| ||||||||||| | ||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  17158886 cagttgttacttctcagttgacagtccctatgcccaagacgtcattgtcgtcaacacctttcagctttccactacataacgtgtttgacaacatttctag 17158787  T
Q  128 tgaggagctgctactagctacgccagtgtttgaaattgtttcccggtt---gcatgatgaagtgcattctgagagag-cggagcagtcgcatccgacatc 223  Q
    |||  |||||| ||| |||||||||||||||||||||||||||  |||   ||| ||||||||||||||||||||||  ||| ||||||||||||| |||    
T  17158786 tgaaaagctgccactcgctacgccagtgtttgaaattgtttcctagtttgcgcacgatgaagtgcattctgagagagtgggatcagtcgcatccgatatc 17158687  T
Q  224 gcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagt 323  Q
    |||||||||||||||||||| ||| ||||||||||||||| | || ||||||||||||||||| ||||||||||||| |||  || |  |||||||||||    
T  17158686 gcgggaggagttggagaaccctgtggttgacgatgttactgcgacactctcggatgatgtggagcataatcattcgcacccctagtagttggtggagagt 17158587  T
Q  324 ccgaagggtgcccatgagcatgtaccacattcatcaattgttgagca 370  Q
    || ||||| | |||||||||||||| |||||||||||||||| ||||    
T  17158586 cccaagggggaccatgagcatgtactacattcatcaattgttaagca 17158540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 370
Target Start/End: Original strand, 12101751 - 12102064
Alignment:
Q  55 ctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagt 154  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | || ||| || | |||    
T  12101751 ctatgcctatgacgtcattgtcgtcaacatctttcagctttccactacataacgtgtttaacaatatttctagcgaggagctaccacaagcaacacgagt 12101850  T
Q  155 gtttgaaattgtttccc---ggttgcatgatgaagtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagtt 251  Q
    |||||||||| ||||||      |||| ||||| |||||| ||||||||||||||||  | ||| |||||||||||||||||||||||||||   | | |    
T  12101851 gtttgaaattatttccccaattgtgcacgatgacgtgcatcctgagagagcggagcaaacacattcgacatcgcgggaggagttggagaaccccatggct 12101950  T
Q  252 gacgatgttactccaacgctctcggatgatgtggaac----ataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgta 347  Q
    |||||||||||| | |  |         |||||||||    |||||||||||||||| | ||| |||||||||||||| ||||||||| |||||||||||    
T  12101951 gacgatgttactacgatac---------atgtggaacatatataatcattcgcgcccccgggagctggtggagagtcccaagggtgcctatgagcatgta 12102041  T
Q  348 ccacattcatcaattgttgagca 370  Q
    |||||||||||||||||||||||    
T  12102042 ccacattcatcaattgttgagca 12102064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 35 - 370
Target Start/End: Original strand, 14977470 - 14977808
Alignment:
Q  35 tacttctcatatgacggtccctatgcctaggacatcattgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggag 134  Q
    ||||||||| |||| ||||||| |||| ||||| || ||||| ||||||||||| ||||| ||| | || ||| ||||||| |  |||||||||||| ||    
T  14977470 tacttctcagatgatggtccctgtgcccaggacgtctttgtcatcaacatcttttagcttcccattacacaacatgtttgatagtatttctagtgagaag 14977569  T
Q  135 ctgctactagctacgccagtgtttgaaattgtttcccg-gttgc--atgatgaagtgcattctgagagagcggagcagtcgcatccgacatcgcgggagg 231  Q
     ||| |  |||||| |||||| ||||  |||| ||||  |||||  | ||||| |||||||| ||||||| |||||||||||||||||||||||||||||    
T  14977570 ttgccagaagctacaccagtgattgagtttgtgtccccagttgcgcacgatgacgtgcattccgagagagtggagcagtcgcatccgacatcgcgggagg 14977669  T
Q  232 agttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaaggg 331  Q
    || || ||| ||     ||||||||||||||| | ||||| ||  |||||||||||||||||||||||  ||| | ||| |||||||||||||| |||||    
T  14977670 aggtgcagatcccaacggttgacgatgttactgctacgctatcttatgatgtggaacataatcattcgaccccgcgggagctggtggagagtcccaaggg 14977769  T
Q  332 tgcccatgagcatgtaccacattcatcaattgttgagca 370  Q
    | ||||||||||||| ||||||||||| |||||| ||||    
T  14977770 ttcccatgagcatgttccacattcatccattgtttagca 14977808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 11776482 - 11776308
Alignment:
Q  72 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 171  Q
    ||||||||||  ||||||||||||||| | ||||| | ||||||||| ||||||  ||||||| ||| ||  | ||| |||||||| ||  |||||||||    
T  11776482 ttgtcgtcaaactctttcagctttccattacataatgcgtttgacaaaatttctcatgaggagttgccacatgttacaccagtgttagaggttgtttccc 11776383  T
Q  172 g-gttg--catgatgaagtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
      ||||  || ||||| |||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||    
T  11776382 ctgttgtgcacgatgatgtgcattctgagagagtggagcagttgcatcagtcatcgcgggaggagttggagaacc 11776308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 243
Target Start/End: Complemental strand, 24353686 - 24353638
Alignment:
Q  195 gagagagcggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||||||    
T  24353686 gagagagcgaagcagttgcatcagacatcgcgggaggagttggagaacc 24353638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 9352477 - 9352421
Alignment:
Q  187 tgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
    ||||||||||||||| ||| |||| || || ||||||||| |||| |||||||||||    
T  9352477 tgcattctgagagagtggaacagttgcgtctgacatcgcgagaggtgttggagaacc 9352421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 72 - 358
Target Start/End: Complemental strand, 5782191 - 5781902
Alignment:
Q  72 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 171  Q
    ||||||||||  ||||||||||||||| | || || |||||  | |  ||||||  ||||||||||| |   |||||||||||||| ||  |||||||||    
T  5782191 ttgtcgtcaaactctttcagctttccattacacaatgtgttcaatagaatttctcctgaggagctgccatgtgctacgccagtgttagaggttgtttccc 5782092  T
Q  172 g-gttgc--atgatgaagtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 268  Q
      |||||  | ||||| |||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||    || || |||||||||   ||    
T  5782091 ttgttgcgcacgatgacgtgcattctgagagagaggagcagttgcatcagacatcgcggaaggagttggagaaccacacggtggatgatgttactgttac 5781992  T
Q  269 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 358  Q
     || || |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| ||||||||| |||| ||| ||||||    
T  5781991 actttctgatgatgtggaacacaatcattcgatcccgcgggagctggtggagagtcccaagggttcccatgagcgtgtatcacgttcatc 5781902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 72 - 358
Target Start/End: Complemental strand, 19069709 - 19069420
Alignment:
Q  72 ttgtcgtcaacatctttcagctttccactgcataacgtgtttgacaacatttctagtgaggagctgctactagctacgccagtgtttgaaattgtttccc 171  Q
    ||||||||||  ||||||||||||||| | || || | ||||||||| ||||||  | ||||||||| ||  |||||||||||||| ||  || ||||||    
T  19069709 ttgtcgtcaaactctttcagctttccattacacaatgcgtttgacaaaatttctcctaaggagctgccacgtgctacgccagtgttagaggttatttccc 19069610  T
Q  172 g-gttgc--atgatgaagtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaac 268  Q
      |||||  | ||||| |||||||||||||||| ||||| || ||||| ||||||||| ||||||||||||||||     || || |||||||||   ||    
T  19069609 ctgttgcgcacgatgacgtgcattctgagagagaggagcggttgcatcagacatcgcgagaggagttggagaaccccacggtggaagatgttactgttac 19069510  T
Q  269 gctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacattcatc 358  Q
     || ||  ||||||||||||| |||||||||  ||| ||||| |||||||||||||| ||||||  |||||||| | || ||||||||||    
T  19069509 cctttctaatgatgtggaacacaatcattcgatcccgcaggagctggtggagagtcccaagggtttccatgagcgtatatcacattcatc 19069420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 11724701 - 11724758
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
    ||||||||| ||||||| ||||| | ||||| |||||||||||||| |||||||||||    
T  11724701 gtgcattctaagagagcagagcaattgcatctgacatcgcgggaggtgttggagaacc 11724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 346
Target Start/End: Original strand, 17763963 - 17764060
Alignment:
Q  249 gttgacgatgttactccaacgctctcggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgt 346  Q
    ||||| ||||||||| | ||||| || ||||||||||||||||||||||   ||   | ||| |||||||||||||  |||||| |||||||||||||    
T  17763963 gttgatgatgttactgctacgctttctgatgatgtggaacataatcatttaagctggcgggagctggtggagagtctcaagggttcccatgagcatgt 17764060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 186 - 342
Target Start/End: Original strand, 17459431 - 17459587
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    |||||||| |||||||| ||||| | ||||||||||||||||||  ||||||||||||   |||| |||||||| |||   ||||| ||  |||||||||    
T  17459431 gtgcattccgagagagcagagcaattgcatccgacatcgcgggaaaagttggagaaccccatagtggacgatgtcactgttacgctttctaatgatgtgg 17459530  T
Q  286 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagc 342  Q
    |||| ||||||||| |||| | |||  ||||||||||||  || ||| |||||||||    
T  17459531 aacacaatcattcgagcccgcgggagatggtggagagtctcaacggtccccatgagc 17459587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 353
Target Start/End: Original strand, 16311632 - 16311799
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| || ||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16311632 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16311731  T
Q  286 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 353  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  16311732 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 16311799  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 353
Target Start/End: Original strand, 18488416 - 18488583
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| || ||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18488416 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18488515  T
Q  286 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 353  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18488516 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18488583  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 353
Target Start/End: Original strand, 18492626 - 18492793
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| || ||| || | ||||| |||||||||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18492626 gtgcattttgagaaagtggaacaattgcatctgacatcgcgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18492725  T
Q  286 aacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccatgagcatgtaccacat 353  Q
    || |||||| ||||||||||| ||| |||||||||||||| |||||| || | |||| |||| |||||    
T  18492726 aatataatcgttcgcgcccacgggagctggtggagagtcccaagggttcctacgagcgtgtatcacat 18492793  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 175 - 338
Target Start/End: Complemental strand, 19829181 - 19829018
Alignment:
Q  175 tgcatgatgaagtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctc 274  Q
    |||| ||||| |||||||||||||||| ||||| || ||| | |||||| | || ||||||||||||||    |||  |||||||||||   || || ||    
T  19829181 tgcacgatgacgtgcattctgagagagaggagcggttgcaccagacatcacagggggagttggagaaccccacagtgaacgatgttactgttacactttc 19829082  T
Q  275 ggatgatgtggaacataatcattcgcgcccacaggatctggtggagagtccgaagggtgcccat 338  Q
     |||||||||||||| |||||||||  ||| | ||| |||||||||||||| |||||| |||||    
T  19829081 tgatgatgtggaacacaatcattcgaacccgcgggagctggtggagagtcccaagggttcccat 19829018  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 324
Target Start/End: Original strand, 16314023 - 16314161
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| || ||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  16314023 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 16314122  T
Q  286 aacataatcattcgcgcccacaggatctggtggagagtc 324  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  16314123 aatataatcgttcgcgcccacgggagctggtggagagtc 16314161  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 324
Target Start/End: Original strand, 18495017 - 18495155
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    ||||||| ||||| || ||| || | ||||| |||||| ||||||| |||||||||||  || || || |||||  ||   ||||| || ||||||||||    
T  18495017 gtgcattttgagaaagtggaacaattgcatctgacatcacgggaggtgttggagaaccccgtggtggatgatgtctctgttacgctttctgatgatgtgg 18495116  T
Q  286 aacataatcattcgcgcccacaggatctggtggagagtc 324  Q
    || |||||| ||||||||||| ||| |||||||||||||    
T  18495117 aatataatcgttcgcgcccacgggagctggtggagagtc 18495155  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 331
Target Start/End: Complemental strand, 8667994 - 8667849
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaaccatgtagttgacgatgttactccaacgctctcggatgatgtgg 285  Q
    |||||||||||||||||||| || |  || | |||||||||||||| ||||||||||| ||| || || || || |||   || || || || |||||||    
T  8667994 gtgcattctgagagagcggaacaattacaactgacatcgcgggaggtgttggagaaccttgtggtggatgaagtcactgttacactttctgaagatgtgg 8667895  T
Q  286 aacataatcattcgcgcccacaggatctggtggagagtccgaaggg 331  Q
    |||| ||||||||| |||| | | | ||||||||| |||| |||||    
T  8667894 aacacaatcattcgagcccgccgaagctggtggagggtcccaaggg 8667849  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 10692535 - 10692478
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
    |||||||||||||||||  || ||| ||||| ||||||||||||||  ||||||||||    
T  10692535 gtgcattctgagagagcatagtagttgcatctgacatcgcgggaggtattggagaacc 10692478  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 10906301 - 10906244
Alignment:
Q  186 gtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
    |||||||||||||||||  || ||| ||||| ||||||||||||||  ||||||||||    
T  10906301 gtgcattctgagagagcatagtagttgcatctgacatcgcgggaggtattggagaacc 10906244  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 3026 - 2963
Alignment:
Q  180 gatgaagtgcattctgagagagcggagcagtcgcatccgacatcgcgggaggagttggagaacc 243  Q
    ||||| |||||| |||||| ||| |||| || ||||| |||||||| |||||||||||||||||    
T  3026 gatgacgtgcatcctgagacagcagagcggttgcatcagacatcgctggaggagttggagaacc 2963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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