View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16996_high_9 (Length: 360)

Name: NF16996_high_9
Description: NF16996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16996_high_9
NF16996_high_9
[»] chr6 (22 HSPs)
chr6 (4-325)||(2983418-2983744)
chr6 (51-326)||(2935150-2935429)
chr6 (50-326)||(2929860-2930138)
chr6 (50-330)||(2974554-2974828)
chr6 (1-293)||(2965111-2965413)
chr6 (84-330)||(2996658-2996904)
chr6 (35-325)||(2938012-2938286)
chr6 (50-233)||(2954726-2954911)
chr6 (168-316)||(2927721-2927869)
chr6 (1-188)||(2986421-2986624)
chr6 (143-300)||(2658311-2658474)
chr6 (185-326)||(3003174-3003311)
chr6 (185-330)||(2952483-2952624)
chr6 (1-115)||(2927882-2928001)
chr6 (2-135)||(2658141-2658278)
chr6 (51-176)||(2952657-2952778)
chr6 (50-176)||(3003016-3003141)
chr6 (1-48)||(3002948-3002995)
chr6 (1-50)||(2952798-2952847)
chr6 (1-50)||(2974847-2974896)
chr6 (1-50)||(2935449-2935498)
chr6 (1-38)||(2954942-2954979)
[»] chr7 (1 HSPs)
chr7 (55-326)||(3339576-3339850)
[»] scaffold0024 (2 HSPs)
scaffold0024 (71-330)||(34513-34773)
scaffold0024 (50-135)||(43599-43687)
[»] chr3 (2 HSPs)
chr3 (50-325)||(49618963-49619249)
chr3 (48-324)||(49613989-49614269)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 325
Target Start/End: Complemental strand, 2983744 - 2983418
Alignment:
Q  4 tcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatctaat---acaacacacaaaata--atg 98  Q
    ||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    ||||||||| |||||  |||    
T  2983744 tcagaccaattttgtttaacaacaatacaacatgatcaagttgctttatttatatgaaattacaatttcaatctaagtacacaacacacgaaatataatg 2983645  T
Q  99 aaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgca 198  Q
    ||||||||||||||||| | |||||| |||||||||   |||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||    
T  2983644 aaaccattgaaacaaacaacgtacatgggtgataatgagaataacaataattatgaactcaacaatgaaagaaatgactaggatgcttgtactatttgca 2983545  T
Q  199 agacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttag 298  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| | | |||||||||||||| |||||||||||| ||    
T  2983544 agacagaacaaactgtttgaattatagtgagaacaagtagtaagactccagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgag 2983445  T
Q  299 agcagccttcaacttatgccaaggatt 325  Q
    ||  ||||||||||||| || ||||||    
T  2983444 agtggccttcaacttattcctaggatt 2983418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 51 - 326
Target Start/End: Complemental strand, 2935429 - 2935150
Alignment:
Q  51 atttatatgaaagtacaatttcaatctaatacaacacacaaa-ataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataat 149  Q
    |||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| | ||||||||   ||||||||||||| ||||||    
T  2935429 atttatatgaaattacaatttcaatctaatgcaacacaaaaagataatgaaaccattgaaacaaacaacgtacattgaaaataatactaatagaaataat 2935330  T
Q  150 tatgaactcaacaatgaaagaaatcactaggaggcttgt---actacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattc 246  Q
    |||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||||||| ||||| || |||||||| ||| ||||||||||    
T  2935329 tatgaactcaacaatgaaagaaatcactaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagattc 2935230  T
Q  247 cagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattc 326  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||    
T  2935229 cagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgccaaggattc 2935150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 50 - 326
Target Start/End: Complemental strand, 2930138 - 2929860
Alignment:
Q  50 tatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataat 149  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||  |||| |||||||    
T  2930138 tatttatatgaaattacaattttgatctaatacaacacacaaaataatgaaaccattgaaacaaacaacgtacattggtgataataagaataacaataat 2930039  T
Q  150 tatgaactcaacaatgaaagaaatca--ctaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattcc 247  Q
    ||||||||||||||| ||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||| || |||||||| ||| ||||||| |||    
T  2930038 tatgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaaaaagtagtaagaatcc 2929939  T
Q  248 agcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattc 326  Q
    |||||||||||||||||| |||||||||||| | |||||||||||||| |||| |||||||||| ||||||||||||||    
T  2929938 agcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttcaacctatgccaaggattc 2929860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 50 - 330
Target Start/End: Complemental strand, 2974828 - 2974554
Alignment:
Q  50 tatttatatgaaagtacaatttcaatctaatacaacacacaaa-ataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataa 148  Q
    ||||||||||||| || |||||||||||||| ||||||| ||| |||||||||| |||||||||||| | ||||||||      ||| ||||   |||||    
T  2974828 tatttatatgaaattataatttcaatctaatgcaacacaaaaagataatgaaac-attgaaacaaacaacgtacattg------ataataatgaaaataa 2974736  T
Q  149 ttatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattcca 248  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||    
T  2974735 ttatgaactcaacaatgaaagaaatcactaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaaaattcca 2974636  T
Q  249 gcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctac 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2974635 gcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacctatgccaaggattcctac 2974554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 2965413 - 2965111
Alignment:
Q  1 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatctaat---acaacacacaaaa--ta 95  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    |||||||||||||  ||    
T  2965413 ctatcagaccaattttgttcaacaacaatacaacatgatcaagttgctttatttatatgaaattacaatttcaatctaaggacacaacacacaaaagata 2965314  T
Q  96 atgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggc---------tt 186  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         ||    
T  2965313 atgaaaccattgaaacaaacaacgtacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggaagcattaggttgtt 2965214  T
Q  187 gtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaata 286  Q
    ||||||||||||    |||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||  |||||||||||| |||| ||    
T  2965213 gtactacttgca----agaacaaactgtttgaattaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagta 2965118  T
Q  287 atcacgc 293  Q
    |||||||    
T  2965117 atcacgc 2965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 84 - 330
Target Start/End: Original strand, 2996658 - 2996904
Alignment:
Q  84 acacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggagg 183  Q
    |||| ||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2996658 acacccaaaataatgaaaccattgaaacaaacaacttacattggtgataatactaatagcaataattatgaactcaacaatgaaagaaatcactaggagg 2996757  T
Q  184 cttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgca 283  Q
    ||||||| |||||||||||||||||||||| |||||| | |||||||||||| ||||  |||||||||| |||||||||||  ||||||||||| ||||     
T  2996758 cttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgcc 2996857  T
Q  284 ataatcacgccttagagcagccttcaacttatgccaaggattcctac 330  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||    
T  2996858 ataatcacgcctgagagtagccttcaacttatgccaaggattcctac 2996904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 35 - 325
Target Start/End: Complemental strand, 2938286 - 2938012
Alignment:
Q  35 atgatcaagttgctttatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataat 134  Q
    |||||||||||| ||||||||||| ||| |||| |||| |||||| |||||||||||||||||||||| |||||||||||| | |||||||             
T  2938286 atgatcaagttgttttatttatatcaaattacattttcgatctaacacaacacacaaaataatgaaac-attgaaacaaacaacgtacatt--------- 2938197  T
Q  135 actaatagcaataattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaa 234  Q
          | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||| ||    
T  2938196 ------aacaataattatgaactcaacaatgaaagaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaataa 2938103  T
Q  235 gcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggatt 325  Q
    | ||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||||    
T  2938102 gtagtaagattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttatgccaaggatt 2938012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 2954911 - 2954726
Alignment:
Q  50 tatttatatgaaagtacaatttcaatctaat---acaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaat 146  Q
    ||||||||||||| |||||| || ||||||    ||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||    
T  2954911 tatttatatgaaattacaatatcgatctaagtacacaacacacaaaataatgaaaccatagaaacaaacaagttacattggtgataatactaatagcaat 2954812  T
Q  147 aattatgaactcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaaca 233  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||    
T  2954811 aat-atgaactcaacattgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagtgataaca 2954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 168 - 316
Target Start/End: Complemental strand, 2927869 - 2927721
Alignment:
Q  168 agaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgt 267  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||| ||||||||||| ||||||||||||||||| |    
T  2927869 agaaatcactaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagttt 2927770  T
Q  268 gccaaggagtattgcaataatcacgccttagagcagccttcaacttatg 316  Q
    |||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  2927769 gccaaggagttttgcaataatcacgcctgagagtagccttcaacttatg 2927721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 2986624 - 2986421
Alignment:
Q  1 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaa 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| | |||||||||| |||||||    
T  2986624 ctatcagacccattttgttcaacaacaatacaacatgatcaagttgatttatttatatgaaattacaatttcgatctaacaaaacacacaaactaatgaa 2986525  T
Q  101 accattgaaacaaacgaggtacattggtgataa----------------tactaatagcaataattatgaactcaacaatgaaagaaatcactaggaggc 184  Q
    ||||||||||||||| | |||| ||||||||||                || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2986524 accattgaaacaaacaatgtacgttggtgataataataataataataattaataataacaataattatgaactcaacaatgaaagaaatcactaggaggc 2986425  T
Q  185 ttgt 188  Q
    ||||    
T  2986424 ttgt 2986421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 2658311 - 2658474
Alignment:
Q  143 caataattatgaactcaacaatgaaagaaatcactaggaggc------ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagc 236  Q
    ||||||||||||||  |||||||||||||||||||||||| |      |||||||||||| |||||||||||||||||||||||||||||||||| |||     
T  2658311 caataattatgaaccgaacaatgaaagaaatcactaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataagt 2658410  T
Q  237 agtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagag 300  Q
    |||||||||||||||| ||||||| |||  | |||||||||| |||||||||||||||| ||||    
T  2658411 agtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagag 2658474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 326
Target Start/End: Original strand, 3003174 - 3003311
Alignment:
Q  185 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 284  Q
    |||||||||||||||||    |||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  3003174 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaa 3003269  T
Q  285 taatcacgccttagagcagccttcaacttatgccaaggattc 326  Q
    ||||||||||| |||| |||||||||||||||||| ||||||    
T  3003270 taatcacgcctgagagtagccttcaacttatgccatggattc 3003311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 185 - 330
Target Start/End: Complemental strand, 2952624 - 2952483
Alignment:
Q  185 ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaa 284  Q
    |||||||||||||||||    |||||||||||||| || ||||||| |||| |||| |||||||||||||||||||||||| ||||||||||| |||| |    
T  2952624 ttgtactacttgcaaga----acaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgcca 2952529  T
Q  285 taatcacgccttagagcagccttcaacttatgccaaggattcctac 330  Q
    ||||||||||| ||||  || |||||||||| ||||||||| ||||    
T  2952528 taatcacgcctcagagtggctttcaacttattccaaggattactac 2952483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 2928001 - 2927882
Alignment:
Q  1 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatcta---atacaacacacaaa--ata 95  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||   | ||||||||||||  |||    
T  2928001 ctatcagacccattttgttcaacaacaatacaacatgatcaagttgatttatttatatgaaattataatttcaatctaagtacacaacacacaaaagata 2927902  T
Q  96 atgaaaccattgaaacaaac 115  Q
    |||||||||||| |||||||    
T  2927901 atgaaaccattggaacaaac 2927882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 2 - 135
Target Start/End: Original strand, 2658141 - 2658278
Alignment:
Q  2 tatcagacccattttgttcgacaacaatacaacatgatcaagttgctttatttatatgaaagtacaatttcaatcta---atacaacacacaaa--ataa 96  Q
    ||||| ||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||   | ||||||||||||  ||||    
T  2658141 tatcaaacccattttgtgcaacaacaatagaacatgatcaagttgctttatttatatgaaattacaatttcaatataagtacacaacacacaaaagataa 2658240  T
Q  97 tgaaaccattgaaacaaacgaggtacattggtgataata 135  Q
    ||||| ||||||||||||| | ||||||||| |||||||    
T  2658241 tgaaa-cattgaaacaaacaacgtacattggcgataata 2658278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 2952778 - 2952657
Alignment:
Q  51 atttatatgaaagtacaatttcaatctaatacaacacacaaaa--taatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataa 148  Q
    |||||||||||| ||||||||||||||||| ||||||| | |   |||||||||||||||||||||| | ||||||||   |||||| |||||   ||||    
T  2952778 atttatatgaaattacaatttcaatctaatgcaacacaaagagattaatgaaaccattgaaacaaacaacgtacattg---ataataataata---ataa 2952685  T
Q  149 ttatgaactcaacaatgaaagaaatcac 176  Q
    ||||||||||||||||||||||||||||    
T  2952684 ttatgaactcaacaatgaaagaaatcac 2952657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 3003016 - 3003141
Alignment:
Q  50 tatttatatgaaagtacaatttcaatctaatacaacacacaaa-ataatgaaac-cattgaaacaaacgaggtacattggtgataatactaatagcaata 147  Q
    ||||||||||||| |||||||||||||| || ||||||| ||| ||||||||||  |||||||||||| | |||||||| |||||||| ||||   ||||    
T  3003016 tatttatatgaaattacaatttcaatctgatgcaacacaaaaagataatgaaacatattgaaacaaactacgtacattgatgataataataat---aata 3003112  T
Q  148 attatgaactcaacaatgaaagaaatcac 176  Q
    |||||||||| |||||||||||| |||||    
T  3003113 attatgaacttaacaatgaaagacatcac 3003141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3002948 - 3002995
Alignment:
Q  1 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgct 48  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  3002948 ctatcagacccattttgttcaacaacaatacaacatgatcaagttgct 3002995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2952847 - 2952798
Alignment:
Q  1 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgcttt 50  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  2952847 ctatcagaccaattttgttcaacaacaatacaacatgatcaagttgcttt 2952798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2974896 - 2974847
Alignment:
Q  1 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgcttt 50  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||    
T  2974896 ctatcaggccaattttgttcaacaacaatacaacatgatcaagttgcttt 2974847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2935498 - 2935449
Alignment:
Q  1 ctatcagacccattttgttcgacaacaatacaacatgatcaagttgcttt 50  Q
    |||||||||| ||||||||| |||||||||||||||||||||  ||||||    
T  2935498 ctatcagaccaattttgttcaacaacaatacaacatgatcaatatgcttt 2935449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2954979 - 2954942
Alignment:
Q  1 ctatcagacccattttgttcgacaacaatacaacatga 38  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  2954979 ctatcagacccattttgttcaacaacaataaaacatga 2954942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 55 - 326
Target Start/End: Complemental strand, 3339850 - 3339576
Alignment:
Q  55 atatgaaagtacaatttcaatctaatacaacacacaaa-ataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatg 153  Q
    |||| ||| ||||||||| ||||||| ||||||| ||| |||||||||| || ||||||||| | |||||||| | |||||||||| |||||||||||||    
T  3339850 atataaaattacaatttcgatctaatgcaacacaaaaagataatgaaac-atggaaacaaacaacgtacattgataataatactaagagcaataattatg 3339752  T
Q  154 a---actcaacaatgaaagaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagc 250  Q
    |   ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| || |||||||||||| ||||  ||||||||    
T  3339751 atgaactcaacaaagaaagaaatcactaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtacaattccagc 3339652  T
Q  251 aatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattc 326  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||| ||||||||||||||    
T  3339651 aatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggattc 3339576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 71 - 330
Target Start/End: Original strand, 34513 - 34773
Alignment:
Q  71 tcaatctaatacaacacacaaaa--taatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataattatgaactcaacaatgaaa 168  Q
    |||||||||| ||||||  ||||  ||||||||| ||||||||||||   ||| |||| | |||||||||||||||||||||||||||||||||||||||    
T  34513 tcaatctaatgcaacaccaaaaagataatgaaac-attgaaacaaacagcgtaaattgataataatactaatagcaataattatgaactcaacaatgaaa 34611  T
Q  169 gaaatcactaggaggcttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcagtaagattccagcaatggaagcagcagtgtg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||| ||||| |||||||||| |||||||||||| ||    
T  34612 gaaatcactaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtgagaacaagtagtaaaattccagcaacggaagcagcagtttg 34711  T
Q  269 ccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggattcctac 330  Q
    ||||||||| |||| |||||||||||| |||| |||||||||| ||| ||||||||| ||||    
T  34712 ccaaggagttttgccataatcacgcctgagagaagccttcaacctattccaaggattactac 34773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 43599 - 43687
Alignment:
Q  50 tatttatatgaaagtacaatttcaatctaat---acaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataata 135  Q
    ||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  43599 tatttatatgaaattacaatttcaatctaattacacaacacacaaaataatgaaaccattgaaacaaacaacgtacattggtgataata 43687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 325
Target Start/End: Complemental strand, 49619249 - 49618963
Alignment:
Q  50 tatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaataat 149  Q
    ||||||||| | | || |||||||||||||||||||| |||  ||||||||||||||| ||||||| | ||| |||||||||||   ||||  |||||||    
T  49619249 tatttatataatattagaatttcaatctaatacaacaaacatgataatgaaaccattggaacaaacaacgtaaattggtgataa---taatgtcaataat 49619153  T
Q  150 tatgaactcaacaatgaaagaaatcactaggag-gct-------------tgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaag 235  Q
     ||||||||||||||||  ||| | ||||  ||  ||             ||||| |||||||||| ||||||||||| ||||| || || |||||||||    
T  49619152 catgaactcaacaatgattgaacttactactagtacttacattatactgctgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaag 49619053  T
Q  236 cagtaagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggatt 325  Q
     ||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||||| |||| ||||||||  ||||||||||||||    
T  49619052 tagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccataatcacgcctgagagtagccttcagtttatgccaaggatt 49618963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 324
Target Start/End: Complemental strand, 49614269 - 49613989
Alignment:
Q  48 tttatttatatgaaagtacaatttcaatctaatacaacacacaaaataatgaaaccattgaaacaaacgaggtacattggtgataatactaatagcaata 147  Q
    ||||||||||||||  | ||||||||||||| |||||||  ||||||||||||||||||||||||       || |||||| |||||| ||||  |||||    
T  49614269 tttatttatatgaagttgcaatttcaatctagtacaacatgcaaaataatgaaaccattgaaacact-----taaattggtaataataataatcacaata 49614175  T
Q  148 attatgaactcaacaatgaaagaaatcactaggaggc---------ttgtactacttgcaagacagaacaaactgtttgaattatagtgagaacaagcag 238  Q
    |||||||| ||||||||||  ||| | |||| ||  |         |||||| |||||||| || | |||||||| ||||| || || ||||| ||| ||    
T  49614174 attatgaattcaacaatgattgaacttactatgaatcattatattgttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtag 49614075  T
Q  239 taagattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacttatgccaaggat 324  Q
    ||| ||||||||||||||||||||||| ||||||||| | |||||||||||||| || ||||  ||||||||  ||||||||||||    
T  49614074 taaaattccagcaatggaagcagcagtttgccaaggactgttgcaataatcacgtctgagagtcgccttcaatctatgccaaggat 49613989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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