View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16997_high_4 (Length: 238)
Name: NF16997_high_4
Description: NF16997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16997_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 7413806 - 7413591
Alignment:
| Q |
6 |
gtttcgtttagcattctcgcatcccaatgcattttttaccaccattttgtgaagctaagaatacaagcttttgctcaaatgcacggcaacgtcagatgta |
105 |
Q |
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| T |
7413806 |
gtttcgtttagcattctcgcatcccaatgcattttttaccaccattttgtgaagttaagaatacaagcttttgctcaaacgcacggcaacgtcagatgta |
7413707 |
T |
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| Q |
106 |
ccactataacaaacacactatgtatgacgtctaccaccatgatgtaagttaaacggaaccataaatgacaaattatgaaaagttgaatgaaaaacaaaca |
205 |
Q |
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| T |
7413706 |
ccactataacaaacacactatgtatgacgtctaccaccatgatgtaagttaaacggaaccataaatgacaaattatgaaaagttgaatgaaaaacaaaca |
7413607 |
T |
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| Q |
206 |
taatgataatagtgat |
221 |
Q |
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|||||||||||||||| |
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| T |
7413606 |
taatgataatagtgat |
7413591 |
T |
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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 8297176 - 8297071
Alignment:
| Q |
13 |
ttagcattctcgcatcccaatgcattttttaccaccattttgtgaagctaagaatacaagcttttgctcaaatgcacggcaacgtcagatgtaccactat |
112 |
Q |
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| T |
8297176 |
ttagcattctcgtgtcccaatgcctttttgaccaccattttgtgaagctaagaatacaagcttttgctcaaacgcacgaccacgtcaggtttaccactaa |
8297077 |
T |
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| Q |
113 |
aacaaa |
118 |
Q |
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| T |
8297076 |
aacaaa |
8297071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 31440718 - 31440828
Alignment:
| Q |
13 |
ttagcattctcgcatcccaatgcattttttaccaccattttgtgaagctaagaatacaagcttttgctcaaatgcacggcaacgtcagatgtaccactat |
112 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| ||| |||| ||| | |||| | ||||||| |
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| T |
31440718 |
ttagcattctcgcatcccaatgccttttttaccaccattctgtgaagctaagaatacaagtttttgcgcaaccgcacagcagcatcaggttaaccactaa |
31440817 |
T |
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| Q |
113 |
aacaaacacac |
123 |
Q |
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| T |
31440818 |
aacaaacacac |
31440828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 33376313 - 33376233
Alignment:
| Q |
13 |
ttagcattctcgcatcccaatgcattttttaccaccattttgtgaagctaagaatacaagcttttgctcaaatgcacggca |
93 |
Q |
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| T |
33376313 |
ttagcattctggagtctcaatgcctttttgaccaccattttgtgaagctaagaatacaagcttttgctcaaacgcacggca |
33376233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 123
Target Start/End: Original strand, 33684212 - 33684298
Alignment:
| Q |
37 |
ttttttaccaccattttgtgaagctaagaatacaagcttttgctcaaatgcacggcaacgtcagatgtaccactataacaaacacac |
123 |
Q |
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||||| ||||| ||||||||||| |||||||||||| ||||||||||| ||| |||| ||||| | |||||||| ||||||||||| |
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| T |
33684212 |
tttttgaccactattttgtgaagttaagaatacaagattttgctcaaacgcaaggcagcgtcaagtttaccactaaaacaaacacac |
33684298 |
T |
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