View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16997_high_5 (Length: 211)

Name: NF16997_high_5
Description: NF16997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16997_high_5
NF16997_high_5
[»] chr1 (3 HSPs)
chr1 (12-157)||(7995772-7995917)
chr1 (29-106)||(24575766-24575840)
chr1 (29-106)||(5204694-5204769)
[»] chr3 (4 HSPs)
chr3 (27-151)||(49026343-49026460)
chr3 (29-106)||(30662356-30662430)
chr3 (29-106)||(12710542-12710617)
chr3 (29-106)||(26049765-26049840)
[»] chr4 (2 HSPs)
chr4 (23-157)||(24008114-24008241)
chr4 (29-84)||(44378091-44378147)
[»] chr2 (1 HSPs)
chr2 (29-106)||(1094298-1094372)
[»] scaffold0444 (1 HSPs)
scaffold0444 (29-84)||(1010-1066)
[»] chr8 (1 HSPs)
chr8 (29-106)||(13784534-13784609)
[»] chr7 (1 HSPs)
chr7 (29-106)||(17025586-17025661)


Alignment Details
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 7995772 - 7995917
Alignment:
Q  12 agagagaggagtaatgttcgttaatttttaatcaaatttgtagcaattcttatgaaaaagtacataattattattagaagcagcttgtaataaataaatt 111  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7995772 agagagaggggtaatgttcgttaatttttaatcaaatttgtatcaattcttatgaaaaagtacataattattattagaagcaacttgtaataaataaatt 7995871  T
Q  112 acatatcatataagcacacatacatatagatatatatttttgagag 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  7995872 acatatcatataagcacacatacatatagatatatatttttgagag 7995917  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 24575766 - 24575840
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatgaaaaagtacataattattattagaagcagcttgtaataaat 106  Q
    ||||| ||| ||||||||||| |||  ||||||||||||||||||||||   |||||| |||| ||||||||||||||    
T  24575766 tcgttgattattaatcaaattagtaataattcttatgaaaaagtacata---attattggaagaagcttgtaataaat 24575840  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 5204769 - 5204694
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatgaaaaa-gtacataattattattagaagcagcttgtaataaat 106  Q
    ||||| ||| ||||||||||| |||  ||||| ||||||||| ||||||||||||||   |||| ||||||||||||||    
T  5204769 tcgttgattattaatcaaattagtaataattcctatgaaaaaagtacataattatta---gaagaagcttgtaataaat 5204694  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 49026343 - 49026460
Alignment:
Q  27 gttcgttaatttttaatcaaatttgtagcaattcttatgaaaaagtacataattattattagaagcagcttgtaataaataaattacatatcatataagc 126  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| |   || | ||||||||||||||    |||||||||| |||||||||| |    
T  49026343 gttcgttaatttttaatcaaatttgtaacaattcttatgaaaaagtacaca---ataaatagaagcagcttgt----aataaattacgtatcatataaac 49026435  T
Q  127 acacatacatatagatatatatttt 151  Q
    |||||||||||||||||||||||||    
T  49026436 acacatacatatagatatatatttt 49026460  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 30662430 - 30662356
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatgaaaaagtacataattattattagaagcagcttgtaataaat 106  Q
    ||||| ||| ||||||||||| |||  ||||| ||||||||||||||||||   |||| |||| ||||||||||||||    
T  30662430 tcgttgattattaatcaaattagtaataattcctatgaaaaagtacataat---tattggaagaagcttgtaataaat 30662356  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 12710542 - 12710617
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatgaaaaa-gtacataattattattagaagcagcttgtaataaat 106  Q
    ||||| ||| ||||||||||| |||  ||||| ||||||||| |||||||||||   ||||||| ||||||||||||||    
T  12710542 tcgttgattattaatcaaattagtaataattcctatgaaaaaagtacataatta---ttagaagaagcttgtaataaat 12710617  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 26049840 - 26049765
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatgaaaaa-gtacataattattattagaagcagcttgtaataaat 106  Q
    ||||| ||| ||||||||||| |||  ||||| ||||||||| ||||||||||||||   |||| ||||||||||||||    
T  26049840 tcgttgattattaatcaaattagtaataattcctatgaaaaaagtacataattatta---gaagaagcttgtaataaat 26049765  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 24008241 - 24008114
Alignment:
Q  23 taatgttcgttaatttttaatcaaatttgtagcaattcttatgaaaaagtacataattattattagaagcagcttgtaataaataaattacatatcatat 122  Q
    |||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||   |||||||  || ||||    |||||| ||| ||| ||||    
T  24008241 taatgttcgttaatttttgatcaaatttgtaataattcttatgaaaaagtacataatt---attagaaaaagtttgt----aataaactacctattatat 24008149  T
Q  123 aagcacacatacatatagatatatatttttgagag 157  Q
     | ||||||| |||||| |||||||||||||||||    
T  24008148 gaacacacatgcatatacatatatatttttgagag 24008114  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 44378091 - 44378147
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatga-aaaagtacataattatta 84  Q
    ||||| ||||||||| ||||| |||  ||||||||||| ||||||||||||||||||    
T  44378091 tcgttgatttttaattaaattagtaataattcttatgagaaaagtacataattatta 44378147  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 1094298 - 1094372
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatgaaaaagtacataattattattagaagcagcttgtaataaat 106  Q
    ||||| ||| ||||||||||| |||  ||||| ||||||||||||||||   |||||| |||| ||||||||||||||    
T  1094298 tcgttgattattaatcaaattagtaataattcctatgaaaaagtacata---attattggaagaagcttgtaataaat 1094372  T

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Target: scaffold0444 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 1066 - 1010
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatga-aaaagtacataattatta 84  Q
    ||||| ||||||||| ||||| |||  ||||||||||| ||||||||||||||||||    
T  1066 tcgttgatttttaattaaattagtaataattcttatgagaaaagtacataattatta 1010  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 13784534 - 13784609
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatgaaaaa-gtacataattattattagaagcagcttgtaataaat 106  Q
    ||||| ||| ||||||||||| |||  ||||| ||||||||| |||||||||||   ||||||| ||||||||||||||    
T  13784534 tcgttgattattaatcaaattagtaataattcctatgaaaaaagtacataatta---ttagaagaagcttgtaataaat 13784609  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 17025661 - 17025586
Alignment:
Q  29 tcgttaatttttaatcaaatttgtagcaattcttatgaaaaa-gtacataattattattagaagcagcttgtaataaat 106  Q
    ||||| ||| ||||||||||| |||  ||||| ||||||||| ||||||||||||||   |||| ||||||||||||||    
T  17025661 tcgttgattattaatcaaattagtaataattcctatgaaaaaagtacataattatta---gaagaagcttgtaataaat 17025586  T

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