View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16997_low_1 (Length: 1513)

Name: NF16997_low_1
Description: NF16997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16997_low_1
NF16997_low_1
[»] chr7 (16 HSPs)
chr7 (1190-1496)||(20145813-20146119)
chr7 (1190-1478)||(14986989-14987278)
chr7 (1190-1478)||(15416600-15416889)
chr7 (1190-1494)||(2546914-2547215)
chr7 (1274-1490)||(17600539-17600754)
chr7 (1194-1456)||(24832402-24832670)
chr7 (1274-1496)||(3743380-3743608)
chr7 (1287-1449)||(4173452-4173615)
chr7 (1029-1122)||(2545771-2545864)
chr7 (1041-1182)||(20146231-20146371)
chr7 (1044-1186)||(14986744-14986882)
chr7 (1044-1186)||(15416355-15416493)
chr7 (1042-1161)||(4173104-4173222)
chr7 (1294-1398)||(10649240-10649344)
chr7 (1313-1445)||(18046371-18046501)
chr7 (1040-1076)||(2563197-2563233)
[»] chr8 (23 HSPs)
chr8 (1190-1496)||(28371034-28371341)
chr8 (1275-1491)||(9218079-9218298)
chr8 (930-1186)||(28371450-28371705)
chr8 (1041-1159)||(23539981-23540099)
chr8 (1274-1405)||(23540219-23540351)
chr8 (1367-1493)||(10660970-10661095)
chr8 (1274-1446)||(9286326-9286498)
chr8 (1274-1408)||(16600591-16600725)
chr8 (1212-1374)||(10661748-10661911)
chr8 (1293-1435)||(13110204-13110345)
chr8 (1044-1122)||(10662109-10662187)
chr8 (1358-1405)||(26136195-26136242)
chr8 (1295-1435)||(18672125-18672261)
chr8 (1340-1446)||(22713661-22713767)
chr8 (1274-1338)||(24577344-24577408)
chr8 (945-1122)||(16600980-16601159)
chr8 (1296-1431)||(25095052-25095187)
chr8 (1274-1446)||(27123582-27123752)
chr8 (1343-1394)||(15340931-15340983)
chr8 (1343-1394)||(15429996-15430048)
chr8 (1343-1394)||(15521300-15521352)
chr8 (1343-1394)||(41652021-41652073)
chr8 (1385-1431)||(9006930-9006976)
[»] chr2 (19 HSPs)
chr2 (1190-1498)||(18929235-18929543)
chr2 (1204-1496)||(26650839-26651133)
chr2 (949-1186)||(18929651-18929887)
chr2 (1287-1490)||(17402729-17402932)
chr2 (1262-1477)||(25520385-25520601)
chr2 (233-422)||(17403898-17404087)
chr2 (1287-1446)||(31404046-31404205)
chr2 (945-1125)||(17403198-17403377)
chr2 (1042-1161)||(26651281-26651400)
chr2 (1190-1325)||(19878981-19879117)
chr2 (79-202)||(24545313-24545437)
chr2 (1190-1446)||(24543870-24544126)
chr2 (73-215)||(17404166-17404309)
chr2 (1287-1413)||(20478255-20478379)
chr2 (977-1097)||(25519999-25520118)
chr2 (1285-1398)||(29891263-29891376)
chr2 (1343-1394)||(28760672-28760724)
chr2 (1345-1431)||(17162015-17162101)
chr2 (1345-1446)||(17636690-17636791)
[»] chr5 (28 HSPs)
chr5 (1203-1470)||(19217911-19218177)
chr5 (1198-1456)||(20064388-20064653)
chr5 (1190-1456)||(20060802-20061075)
chr5 (1190-1405)||(20713228-20713443)
chr5 (1189-1405)||(23210024-23210240)
chr5 (1190-1456)||(20058550-20058824)
chr5 (972-1179)||(20064063-20064265)
chr5 (1192-1405)||(25951315-25951528)
chr5 (1041-1161)||(25951664-25951783)
chr5 (1042-1161)||(20058300-20058418)
chr5 (1041-1139)||(21165557-21165655)
chr5 (1039-1161)||(23209772-23209893)
chr5 (1274-1374)||(23379373-23379474)
chr5 (1287-1446)||(17167275-17167433)
chr5 (1340-1446)||(19924022-19924128)
chr5 (1298-1494)||(23355581-23355777)
chr5 (1313-1446)||(24878356-24878489)
chr5 (1042-1161)||(20061207-20061323)
chr5 (353-420)||(24879513-24879580)
chr5 (1340-1446)||(19926749-19926855)
chr5 (1292-1425)||(17987487-17987619)
chr5 (1042-1086)||(19217727-19217771)
chr5 (1088-1161)||(20713575-20713647)
chr5 (1015-1123)||(24878782-24878889)
chr5 (1011-1086)||(17987914-17987988)
chr5 (1011-1121)||(22011479-22011588)
chr5 (1463-1494)||(24878288-24878319)
chr5 (1345-1394)||(31533052-31533102)
[»] chr3 (25 HSPs)
chr3 (1190-1496)||(15686859-15687166)
chr3 (1262-1489)||(24699049-24699275)
chr3 (1274-1490)||(26010836-26011055)
chr3 (1294-1477)||(13428733-13428914)
chr3 (944-1122)||(9033046-9033225)
chr3 (1189-1494)||(4765605-4765916)
chr3 (1274-1469)||(4769742-4769937)
chr3 (1190-1405)||(7148790-7149005)
chr3 (1274-1496)||(4832516-4832740)
chr3 (1190-1413)||(9033398-9033622)
chr3 (1190-1402)||(29614512-29614724)
chr3 (974-1163)||(4765286-4765475)
chr3 (1298-1440)||(23378488-23378631)
chr3 (945-1158)||(4770096-4770307)
chr3 (1274-1405)||(16242937-16243069)
chr3 (1043-1161)||(24698727-24698845)
chr3 (1042-1122)||(15687340-15687420)
chr3 (1044-1137)||(16242605-16242699)
chr3 (1042-1160)||(29614037-29614155)
chr3 (1313-1436)||(27304424-27304547)
chr3 (1055-1163)||(4832190-4832300)
chr3 (1362-1436)||(8737234-8737308)
chr3 (1362-1436)||(9089472-9089546)
chr3 (1385-1431)||(13409833-13409879)
chr3 (1042-1125)||(13428406-13428488)
[»] chr6 (20 HSPs)
chr6 (1268-1496)||(22397548-22397777)
chr6 (1190-1405)||(16177304-16177519)
chr6 (945-1158)||(17525233-17525444)
chr6 (1189-1401)||(15830026-15830238)
chr6 (1287-1487)||(17524797-17524998)
chr6 (1274-1405)||(1177214-1177349)
chr6 (975-1103)||(31125745-31125872)
chr6 (1313-1446)||(18713709-18713842)
chr6 (1313-1446)||(17947890-17948023)
chr6 (1341-1446)||(14762985-14763090)
chr6 (948-1122)||(22394009-22394179)
chr6 (1190-1456)||(31126065-31126351)
chr6 (1042-1126)||(16177672-16177759)
chr6 (1083-1160)||(1176918-1176994)
chr6 (1343-1444)||(28712360-28712461)
chr6 (1343-1394)||(13002854-13002906)
chr6 (1053-1139)||(32784447-32784534)
chr6 (1361-1431)||(25945846-25945916)
chr6 (1345-1394)||(24154179-24154229)
chr6 (1343-1387)||(10163272-10163317)
[»] chr4 (9 HSPs)
chr4 (1262-1496)||(11361595-11361830)
chr4 (1288-1489)||(9409168-9409370)
chr4 (1041-1184)||(11362017-11362160)
chr4 (1274-1446)||(16675086-16675259)
chr4 (1343-1405)||(5358040-5358102)
chr4 (1274-1446)||(4697454-4697626)
chr4 (1384-1431)||(18558469-18558516)
chr4 (1343-1393)||(26654144-26654195)
chr4 (1008-1086)||(10071001-10071078)
[»] chr1 (17 HSPs)
chr1 (1190-1451)||(20146169-20146437)
chr1 (1190-1470)||(11013745-11014027)
chr1 (1190-1440)||(33103021-33103273)
chr1 (1045-1182)||(20146549-20146686)
chr1 (1042-1163)||(11013493-11013614)
chr1 (1274-1446)||(36571655-36571826)
chr1 (1275-1402)||(20150435-20150563)
chr1 (930-1123)||(22619579-22619770)
chr1 (1276-1426)||(22607834-22607984)
chr1 (1190-1402)||(13201980-13202192)
chr1 (1274-1432)||(17615272-17615430)
chr1 (1313-1403)||(22620063-22620153)
chr1 (1374-1446)||(20866221-20866293)
chr1 (1262-1325)||(13232737-13232801)
chr1 (1385-1424)||(20886571-20886610)
chr1 (1344-1394)||(23455191-23455242)
chr1 (1041-1123)||(17615684-17615766)
[»] scaffold0555 (2 HSPs)
scaffold0555 (1190-1451)||(5582-5851)
scaffold0555 (1049-1182)||(5337-5470)
[»] scaffold0264 (2 HSPs)
scaffold0264 (1190-1496)||(20793-21097)
scaffold0264 (1052-1163)||(21225-21337)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1190-1446)||(374041-374294)
scaffold0002 (945-1098)||(373696-373847)
[»] scaffold0337 (2 HSPs)
scaffold0337 (1274-1446)||(17221-17392)
scaffold0337 (1331-1446)||(4546-4661)
[»] scaffold0795 (2 HSPs)
scaffold0795 (1042-1186)||(5725-5869)
scaffold0795 (1190-1250)||(5971-6031)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1274-1374)||(12991-13092)
[»] scaffold0161 (1 HSPs)
scaffold0161 (1049-1161)||(5276-5388)
[»] scaffold0142 (1 HSPs)
scaffold0142 (1262-1415)||(20572-20725)
[»] scaffold1102 (1 HSPs)
scaffold1102 (1274-1398)||(871-996)
[»] scaffold0040 (1 HSPs)
scaffold0040 (1343-1446)||(26930-27031)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 4e-94; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 4e-94
Query Start/End: Original strand, 1190 - 1496
Target Start/End: Complemental strand, 20146119 - 20145813
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||||| |||||||||||| ||| |  || ||||| ||||  |||||| |||||  ||    
T  20146119 tgggagacaagcggttgtcttcatggaaggagtgctgatcgtgggattagtttctttccaagttatttcctatgtataaatagtagtttttcataggtaa 20146020  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    |||||||||||||||||| || || |||||||||||| || |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  20146019 aacgggtcgcaaatcacccatgcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaacca 20145920  T
Q  1389 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 1488  Q
    |||||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||    
T  20145919 cctttatttttaatgcattgtattctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacct-ttttctgtcgaaag 20145821  T
Q  1489 acgccaca 1496  Q
    ||||||||    
T  20145820 acgccaca 20145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 8e-77
Query Start/End: Original strand, 1190 - 1478
Target Start/End: Original strand, 14986989 - 14987278
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||| ||||||||||||||||||  ||    
T  14986989 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 14987087  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  14987088 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 14987187  T
Q  1389 cctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 1478  Q
    |||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  14987188 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 14987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 8e-77
Query Start/End: Original strand, 1190 - 1478
Target Start/End: Original strand, 15416600 - 15416889
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  |||||||||||  ||| | ||||||||| ||||||||||||||||||  ||    
T  15416600 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttccac-ttattttctttgtataaataagagttttccatagggaa 15416698  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    || |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  15416699 aatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgtatgtaaaagatttttcgaacca 15416798  T
Q  1389 cctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacctttttt 1478  Q
    |||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| |||||||| ||||||||    
T  15416799 cctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttttaaaccctttttt 15416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 1190 - 1494
Target Start/End: Complemental strand, 2547215 - 2546914
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| ||||||||| |  |   | ||| ||||| | ||| ||||||||||||  ||    
T  2547215 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttctagttatttttctatgtataagtaatagttttccatagggaa 2547116  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    |||||||||||||||||||||| | |||||||||||| || ||||||||   |||||||||| |||||||||||||| |||||||||||||| |  ||||    
T  2547115 aacgggtcgcaaatcacctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaaaggatttggcagacca 2547016  T
Q  1389 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 1488  Q
    ||||||||||     ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||    
T  2547015 cctttatttta----cattgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaaccttttttccgtcgaaag 2546920  T
Q  1489 acgcca 1494  Q
    ||||||    
T  2546919 acgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 4e-60
Query Start/End: Original strand, 1274 - 1490
Target Start/End: Complemental strand, 17600754 - 17600539
Alignment:
Q  1274 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| || |||||||||  |||||| |||||||||||||||||||||||||    
T  17600754 agttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaagaatgtatgtaa 17600655  T
Q  1373 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc 1472  Q
    |||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| |||| || ||||||||| |  | |||| ||||| |||||||||||    
T  17600654 aggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaacct--ttcctttacttttcttttaaaacc 17600557  T
Q  1473 ttttttctgtcgaaagac 1490  Q
    |||||| |||||||||||    
T  17600556 ttttttttgtcgaaagac 17600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 6e-47
Query Start/End: Original strand, 1194 - 1456
Target Start/End: Complemental strand, 24832670 - 24832402
Alignment:
Q  1194 agacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacg 1292  Q
    ||||||||| ||||||||||||||| |||| ||||  || |||| ||||||||| |  ||| |  || ||||| ||||| |||||| |||||  ||||||    
T  24832670 agacaagcggttgtctacatggaaggagtggtgatcatgagattagtttctttctac-ttatttcctatgtataaataatagtttttcatagggaaaacg 24832572  T
Q  1293 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 1392  Q
    ||||||||||| |||||||| |||| ||||||| || ||||| ||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  24832571 ggtcgcaaatcgcctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccaccat 24832473  T
Q  1393 tatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 1456  Q
    |||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  24832472 tatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 90; E-Value: 9e-43
Query Start/End: Original strand, 1274 - 1496
Target Start/End: Complemental strand, 3743608 - 3743380
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta 1371  Q
    ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||   |||||||||||||||| |||||||  |    
T  3743608 agttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataaaaaatgtataca 3743509  T
Q  1372 aaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt-aaactt-aatgccttaactttgctttt--a 1467  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||  ||||||| | | ||||||||||| |||||| |||||||| ||||| || ||  |    
T  3743508 aaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttactttactgttaaa 3743409  T
Q  1468 aaaccttttttctgtcgaaagacgccaca 1496  Q
    ||||| ||||| ||||||||||| |||||    
T  3743408 aaaccctttttttgtcgaaagacaccaca 3743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 8e-37
Query Start/End: Original strand, 1287 - 1449
Target Start/End: Original strand, 4173452 - 4173615
Alignment:
Q  1287 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 1386  Q
    ||||||||||||||||| |||||| | |||||||||||| || ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  4173452 aaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 4173551  T
Q  1387 cacctttatttttaatgca-ttgtattttacctttcctttacgtttctgcaatttaaacttaat 1449  Q
     |  ||||| ||||||||| ||| ||||    ||| ||||| ||||||||||||||||||||||    
T  4173552 tagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 1029 - 1122
Target Start/End: Complemental strand, 2545864 - 2545771
Alignment:
Q  1029 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1122  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtctttt 2545771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 1041 - 1182
Target Start/End: Complemental strand, 20146371 - 20146231
Alignment:
Q  1041 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 1140  Q
    ||||||| ||||||||||| |||| | || |||||||||||||||| ||||| ||||||| ||  |||||| ||||  ||| ||||  | ||||||||||    
T  20146371 ttgttagatggtattttcatcagcgttatgtaatgtggtcaacattagttgacttttactgttaaaggaatcgaagcttttccttctgttaaaggagttt 20146272  T
Q  1141 caaagagatgttggacttagcattgaaaagtctcgaagcctt 1182  Q
    ||| ||||||||||| |||||| | |||||||| ||||||||    
T  20146271 caacgagatgttggagttagca-taaaaagtcttgaagcctt 20146231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1044 - 1186
Target Start/End: Original strand, 14986744 - 14986882
Alignment:
Q  1044 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 1142  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  14986744 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 14986838  T
Q  1143 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 1186  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  14986839 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 14986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1044 - 1186
Target Start/End: Original strand, 15416355 - 15416493
Alignment:
Q  1044 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 1142  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  15416355 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 15416449  T
Q  1143 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 1186  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  15416450 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 15416493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1042 - 1161
Target Start/End: Original strand, 4173104 - 4173222
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1141  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| ||||| || || | ||||||| ||  |||| ||| ||||||||||| ||| |||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttgacttataattttgcaggtatcaaagtatttccttcaatcaaaagag-ttc 4173202  T
Q  1142 aaagagatgttggacttagc 1161  Q
     | |||||||||||| ||||    
T  4173203 gacgagatgttggacctagc 4173222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1294 - 1398
Target Start/End: Original strand, 10649240 - 10649344
Alignment:
Q  1294 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccacctt 1392  Q
    |||||||||||| |||| ||| ||| |||||| || |||||||||  |||||||||||||| ||||||||||||||||||  |||||  | |||||||||    
T  10649240 gtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaagaatgtatgtaaactgattttccaaaccacctt 10649338  T
Q  1393 tatttt 1398  Q
    ||||||    
T  10649339 tatttt 10649344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1313 - 1445
Target Start/End: Complemental strand, 18046501 - 18046371
Alignment:
Q  1313 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtat 1411  Q
    ||||||||||||| |  ||||||||| |||||| |||||   |||| | ||||| ||||| | |||||||||||||||||||| |||||||||| || |     
T  18046501 aaattctaaaacaattgaagtaccggcgcgagaaaaaagg--catacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaa 18046405  T
Q  1412 tttacctttcctttacgtttctgcaatttaaact 1445  Q
    ||||||||| ||||| |||| |||  ||||||||    
T  18046404 tttaccttttctttaagtttttgcgttttaaact 18046371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1040 - 1076
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  1040 tttgttagctggtattttcaccagcctcatttaatgt 1076  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 3e-92; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-92
Query Start/End: Original strand, 1190 - 1496
Target Start/End: Complemental strand, 28371341 - 28371034
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccataga-a 1287  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| |||| |||||||||||| ||| | |||| ||||| ||||  ||||||||||||  |    
T  28371341 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgagattagtttctttccaagttatt-tcttatgtataaatagtagttttccataggga 28371243  T
Q  1288 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    ||| ||||||||||||||||||| |||||||||||||| || ||||||| | | ||| ||||| ||||||||||||||||||||||| ||||||||||||    
T  28371242 aaatgggtcgcaaatcacctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaaagtatttgtcgaacc 28371143  T
Q  1388 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 1487  Q
     ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  28371142 tcctttatttttaatgcattgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaaccatttttctgtcgaaa 28371043  T
Q  1488 gacgccaca 1496  Q
    |||||||||    
T  28371042 gacgccaca 28371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 7e-62
Query Start/End: Original strand, 1275 - 1491
Target Start/End: Complemental strand, 9218298 - 9218079
Alignment:
Q  1275 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 1373  Q
    |||||||||||  ||||||||||||||||||| |||||| |||||||||||| || ||||||||  ||||||||||||  ||||| ||||||||||||||    
T  9218298 gttttccatagggaaaacgggtcgcaaatcacatatacagaattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaa 9218201  T
Q  1374 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc- 1472  Q
     |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||||||||||| |     
T  9218200 tgatttgtcgaaccatctttatttttaatgcattgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacc 9218101  T
Q  1473 ---ttttttctgtcgaaagacg 1491  Q
       |||||||||||||||||||    
T  9218100 tttttttttctgtcgaaagacg 9218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 930 - 1186
Target Start/End: Complemental strand, 28371705 - 28371450
Alignment:
Q  930 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 1029  Q
    |||||||||| |  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |    
T  28371705 aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattttt 28371606  T
Q  1030 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat 1129  Q
    ||| || ||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| ||||| ||||| ||| | |||||| |||  |||| | ||| |    
T  28371605 tggtgg-caatttgttagttggtattttcactagcataatttaatgtggccaatattagttgacttttattctggtaggaatcgaaacctttccctcagt 28371507  T
Q  1130 caaaggagtttcaaagagatgttggacttagcattgaaaagtctcgaagccttaaag 1186  Q
     ||||||||||  | |||||||||||||||||||  |||||||| ||||||||||||    
T  28371506 taaaggagttttgacgagatgttggacttagcatgaaaaagtctggaagccttaaag 28371450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 1041 - 1159
Target Start/End: Original strand, 23539981 - 23540099
Alignment:
Q  1041 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 1140  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttttcttcaatcaaaggagttt 23540080  T
Q  1141 caaagagatgttggactta 1159  Q
    | | |||||||||||||||    
T  23540081 cgacgagatgttggactta 23540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 1274 - 1405
Target Start/End: Original strand, 23540219 - 23540351
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | ||||||||||||  | |||||||||| |||||||||||||||||||    
T  23540219 agttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaagaatgtatgtaa 23540318  T
Q  1373 aggatttgtcgaaccacctttatttttaatgca 1405  Q
    | ||||| |||||||||||||||||||||||||    
T  23540319 aagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 8e-34
Query Start/End: Original strand, 1367 - 1493
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  1367 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgctttt 1466  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||  || ||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  1467 aaaaccttttttctgtcgaaagacgcc 1493  Q
    ||||||  ||||||||| |||||||||    
T  10660995 aaaacc-cttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 1274 - 1446
Target Start/End: Original strand, 9286326 - 9286498
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||||| ||| ||| | |||||||||||    
T  9286326 agttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaaaatgtatgtaa 9286424  T
Q  1373 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
    |||||||||||||| |||||||||||||||||| || | |||| ||||  |||| ||||||||| ||| |||||    
T  9286425 aggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 1274 - 1408
Target Start/End: Complemental strand, 16600725 - 16600591
Alignment:
Q  1274 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||| ||||| ||| | |||||| ||||    
T  16600725 agttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttatacataatgtacgtaa 16600627  T
Q  1373 aggatttgtcgaaccacctttatttttaatgcattg 1408  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16600626 aggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 1212 - 1374
Target Start/End: Complemental strand, 10661911 - 10661748
Alignment:
Q  1212 atggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaatcacctata 1310  Q
    ||||||| |||| |||| |||||||| |||||||||||  ||  | ||| ||||| |||||||||||||||| |  ||||| ||||||||||||||||||    
T  10661911 atggaaggagtgttgatcgtgggattagtttctttccag-ttgttttctatgtataaataagagttttccattgggaaaacaggtcgcaaatcacctata 10661813  T
Q  1311 caaaattctaaaacat-tcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 1374  Q
    || ||||||||||  | |||| ||||||| |||| | ||||||||||||||||||||||||||||    
T  10661812 cagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatgtatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 1293 - 1435
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  1293 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 1392  Q
    ||||||||||||| |||| ||| ||||| |||| || ||||||||| | ||||||||||||| ||| | ||| |||||| | ||||||| ||||||||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  1393 tatttttaatgcattgtattttacctttcctttacgtttctgc 1435  Q
    ||||||||||||| || | |||| |||| ||||| ||||||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1044 - 1122
Target Start/End: Complemental strand, 10662187 - 10662109
Alignment:
Q  1044 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1122  Q
    ||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtctttt 10662109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1358 - 1405
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  1358 aaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 1405  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1295 - 1435
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  1295 tcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttta 1394  Q
    ||||||||||| |||| ||| ||||| |||| || |||||| || | ||||||||||||| ||| | |||||||||||| ||||||| ||   |||||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttga---accttta 18672220  T
Q  1395 tttttaatgcattgtattttacctttcctttacgtttctgc 1435  Q
    ||||||||||| |||| |||| |||| ||| | ||||||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1340 - 1446
Target Start/End: Original strand, 22713661 - 22713767
Alignment:
Q  1340 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 1439  Q
    |||| |||||||| | ||| ||||| ||||||||| ||||||| |||||||||||||||||||||| ||||  ||| |||| ||||| |||||| || ||    
T  22713661 gcgatagaaaagatttatatagaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtttctacactt 22713760  T
Q  1440 taaactt 1446  Q
    | |||||    
T  22713761 ttaactt 22713767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1274 - 1338
Target Start/End: Original strand, 24577344 - 24577408
Alignment:
Q  1274 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccgg 1338  Q
    |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| || |||||||||    
T  24577344 agtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 945 - 1122
Target Start/End: Complemental strand, 16601159 - 16600980
Alignment:
Q  945 tgacatcatgctttgaaatacttag--cgttttctcaaaaatgtcaattctctccgttgat-tatattccgtcgaaaatggcatttcttggggggcaatt 1041  Q
    ||||||||||||||||||| ||| |  |||||| |||||||||||||||| |||| | ||  | | ||| |||||||||| ||||| ||| ||| |||||    
T  16601159 tgacatcatgctttgaaatgcttgggacgtttt-tcaaaaatgtcaattccctccttcgaaattttttcagtcgaaaatgacattttttgaggg-caatt 16601062  T
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt 1122  Q
    | |||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| ||||||   |||||||||||||||| ||||    
T  16601061 tattagcctgtaatttcaacagactcatttaatgcagtcaacattagttgactttttatctttgcaggaattgaagtatttt 16600980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1296 - 1431
Target Start/End: Complemental strand, 25095187 - 25095052
Alignment:
Q  1296 cgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaaccaccttta 1394  Q
    |||||||||| |||| ||| ||||||||||  | ||||||||| |||||| |||||||| ||| |  |||||||| |||  |||||||||||||||||||    
T  25095187 cgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatacatgatgtatgtaaaattatttgtcgaaccaccttta 25095089  T
Q  1395 tttttaatgcattgtattttacctttcctttacgttt 1431  Q
    || | |||||| || | |||| |||| ||||| ||||    
T  25095088 ttataaatgcaatgcaatttatcttttctttaagttt 25095052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1274 - 1446
Target Start/End: Original strand, 27123582 - 27123752
Alignment:
Q  1274 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    |||||||||||| ||||| | |||||||||||  |||| ||| ||||| |||| |||  ||||||  ||||||||||||||| ||| | |||||||||||    
T  27123582 agttttccataggaaaaatgagtcgcaaatcaattatagaaa-ttctacaacactca--gtaccgatgcgagagaaaagagttatacataatgtatgtaa 27123678  T
Q  1373 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
       ||||| |||||||||||||| |||||||||| || | |||| | |||||||| |||| |||  |||||||||    
T  27123679 tctgatttatcgaaccaccttta-ttttaatgcaatgcaatttatcattcctttaagtttatgcgttttaaactt 27123752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1343 - 1394
Target Start/End: Original strand, 15340931 - 15340983
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 1394  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15340931 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15340983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1343 - 1394
Target Start/End: Original strand, 15429996 - 15430048
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 1394  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15429996 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15430048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1343 - 1394
Target Start/End: Original strand, 15521300 - 15521352
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 1394  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15521300 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15521352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1343 - 1394
Target Start/End: Original strand, 41652021 - 41652073
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 1394  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  41652021 agagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccaccttta 41652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1385 - 1431
Target Start/End: Complemental strand, 9006976 - 9006930
Alignment:
Q  1385 accacctttatttttaatgcattgtattttacctttcctttacgttt 1431  Q
    ||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  9006976 accacctttatttttaatgcaatacattttacctttcctttaagttt 9006930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 2e-90; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-90
Query Start/End: Original strand, 1190 - 1498
Target Start/End: Complemental strand, 18929543 - 18929235
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| |||||||||||| ||| | ||| || || ||||  ||||||||| ||  ||    
T  18929543 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaagttattttctatgcataaatagtagttttccaaagggaa 18929444  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    || |||| |||||||||||||| | |||||||||||| || ||||||||| | ||||||| | |||||||||||||||||||||| ||||| ||||||||    
T  18929443 aatgggttgcaaatcacctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaacca 18929344  T
Q  1389 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 1488  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||     
T  18929343 cctttatttttaatgcattgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacct-ttttatgtcgaaat 18929245  T
Q  1489 acgccacagg 1498  Q
    ||||||||||    
T  18929244 acgccacagg 18929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 2e-86
Query Start/End: Original strand, 1204 - 1496
Target Start/End: Complemental strand, 26651133 - 26650839
Alignment:
Q  1204 ttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaat 1302  Q
    ||||||||||||||  |||||| || |||||||| ||||||||| |  |   | ||| ||||| ||||||||||||||||||  ||||| ||||||||||    
T  26651133 ttgtctacatggaatgagtgctaatcgtgggattggtttctttctagttatttttctatgtataaataagagttttccatagggaaaacaggtcgcaaat 26651034  T
Q  1303 cacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaat 1402  Q
    |||||||||| |||||||||||| || ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26651033 cacctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttataat 26650934  T
Q  1403 gcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa-ccttttttctgtcgaaagacgccaca 1496  Q
     ||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| ||||||    
T  26650933 ccattgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgcttttaaaacccttttttctgtcgaaagaagccaca 26650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 949 - 1186
Target Start/End: Complemental strand, 18929887 - 18929651
Alignment:
Q  949 atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 1048  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  18929887 atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc 18929789  T
Q  1049 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagaga 1148  Q
    |||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| |  |||    
T  18929788 tggtattttcaccaacctcatttaatgtggtgaacattagttgacttttactcttgcaggaattgaagtattttcctcaattaaaggagtttcgacaaga 18929689  T
Q  1149 tgttggacttagcattgaaaagtctcgaagccttaaag 1186  Q
    | |||||||||||||  |||||||||||| ||||||||    
T  18929688 ttttggacttagcatgaaaaagtctcgaatccttaaag 18929651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 7e-68
Query Start/End: Original strand, 1287 - 1490
Target Start/End: Complemental strand, 17402932 - 17402729
Alignment:
Q  1287 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 1386  Q
    ||||| |||||||||||||||||| | |||||||||||| || |||||||||  |||||||||| ||| ||||||||||||||||||||||||||  |||    
T  17402932 aaaacaggtcgcaaatcacctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataac 17402833  T
Q  1387 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaa 1486  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||    
T  17402832 cacctttatttttaatgcattgtattttatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaaaccttttttttgttgaa 17402733  T
Q  1487 agac 1490  Q
    ||||    
T  17402732 agac 17402729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 117; E-Value: 7e-59
Query Start/End: Original strand, 1262 - 1477
Target Start/End: Original strand, 25520385 - 25520601
Alignment:
Q  1262 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 1360  Q
    ||||| ||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| || ||||  ||| ||||||||||||||||||| |    
T  25520385 tgtataaataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcataca 25520484  T
Q  1361 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 1460  Q
     |||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||| |||||  |||||||||||| ||||||||||||| |||||    
T  25520485 taatgtatgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttacttt 25520584  T
Q  1461 gcttttaaaaccttttt 1477  Q
    |||||||||||||||||    
T  25520585 gcttttaaaaccttttt 25520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 233 - 422
Target Start/End: Complemental strand, 17404087 - 17403898
Alignment:
Q  233 atcatttggctcattaaggacatattgagcgaatcatgtgagaagactataggtttgtgaccttcgcggccaggaaagtcgtcctcaaccttttcagggt 332  Q
    ||||| |||||||| || ||||| ||||||||| ||||||| | |||| |||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  17404087 atcatgtggctcatgaaagacatgttgagcgaagcatgtgaaaggactctaggtttgcgaccttcgctgccaggaaagtcttcctcaaccttttcagggt 17403988  T
Q  333 ctaatttggaatatgcaaagggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatcttgg 422  Q
     ||||||||||| ||   | |||||||  ||||||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||    
T  17403987 gtaatttggaatctgggtaaggccctataaaggcgtaaacagtaccagagacagagtatggaatgagtacctgagatttctaaatcttgg 17403898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 1287 - 1446
Target Start/End: Original strand, 31404046 - 31404205
Alignment:
Q  1287 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaa 1385  Q
    |||| |||||||||||||| |||  ||| |||||||||| || ||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||||    
T  31404046 aaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttatacagaatgtatgtaaaatgatttgtcgaa 31404144  T
Q  1386 ccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
    ||||||||  |||||||||| || | ||||||||| ||||| ||||||||| |||||||||    
T  31404145 ccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 945 - 1125
Target Start/End: Complemental strand, 17403377 - 17403198
Alignment:
Q  945 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 1044  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||  ||||| | ||  || ||  ||| |||||||||||| ||   ||| ||||| |    
T  17403377 tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt 17403279  T
Q  1045 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 1125  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||| | ||||||  |||||| |||||||||||||||||    
T  17403278 tagctggtaattttaccagcctcatttaatgtggtcaacattagttaacttttacctttgcagcaattgaagtcttttctt 17403198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 1e-29
Query Start/End: Original strand, 1042 - 1161
Target Start/End: Complemental strand, 26651400 - 26651281
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1141  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| ||||| ||||||||||   ||||||||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagttttttcttcaacttaaggagtttc 26651301  T
Q  1142 aaagagatgttggacttagc 1161  Q
    || || ||||||||||||||    
T  26651300 aacgatatgttggacttagc 26651281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 1190 - 1325
Target Start/End: Complemental strand, 19879117 - 19878981
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatag-aaa 1288  Q
    ||||||||||||||||||| |||||  || |||| |||| |||||||| |||||||||||| ||| | ||| ||||  ||||  |||||||||||| |||    
T  19879117 tgggagacaagcgtttgtcaacatgagaggagtgttgatcgtgggattagtttctttccaacttattttctatgtaaaaatagtagttttccataggaaa 19879018  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaaca 1325  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19879017 aacgggtcgcaaatcacctatacagaattctaaaaca 19878981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 79 - 202
Target Start/End: Complemental strand, 24545437 - 24545313
Alignment:
Q  79 aacatgccacatttgagtt-caagtttttggtagaactttcatagaaatgcattgcagccaatatcaggttctcatcatactctaaccccgtcttagaaa 177  Q
    |||||||||||||| |||| || | | |||||| ||||||| |||||||||||  ||||||||||||  | ||||||||||||||||||||||||||| |    
T  24545437 aacatgccacatttaagttgcatggtattggtaaaactttcctagaaatgcatcacagccaatatcaactgctcatcatactctaaccccgtcttagaga 24545338  T
Q  178 gttaaataaggttgaaaatccctaa 202  Q
    | | ||||||||| || ||||||||    
T  24545337 gctgaataaggttaaagatccctaa 24545313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1190 - 1446
Target Start/End: Complemental strand, 24544126 - 24543870
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtat-ctttgtattaataagagttttccatag-aa 1287  Q
    ||||||||||||| | || |||||||||| ||||||||| ||||  || | || ||||||  ||| | | || ||||| ||||  |||||||||||| ||    
T  24544126 tgggagacaagcggtagtttacatggaagaagtgctgatcgtggagttaggttttttccag-ttattttactatgtataaatagtagttttccataggaa 24544028  T
Q  1288 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    ||||||||| |||||||| |||| ||| ||  | |||| || ||||| ||| ||||||||||||| | ||| | ||| |||||||||||||| | |||||    
T  24544027 aaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttatacataatatatgtaaaggatttctggaacc 24543929  T
Q  1388 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
    |||||||||||||||||| || | ||||  ||||||  | |||| |||||||| |||||    
T  24543928 acctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 17404309 - 17404166
Alignment:
Q  73 ggagttaacatgccacatttgagtt-caagtttttggtagaactttcatagaaatgcattgcagccaatatcaggttctcatcatactctaaccccgtct 171  Q
    ||||| ||||| |||||||| |||| || | | ||||| ||||||||  |||||| ||| ||||||| ||||| |||||||||||| ||||||  |||||    
T  17404309 ggagtcaacataccacatttaagttgcatggtattggtggaactttcccagaaatacatcgcagccagtatcaagttctcatcatattctaacatcgtct 17404210  T
Q  172 tagaaagttaaataaggttgaaaatccctaattttctccaaata 215  Q
    |||||||||  || |||||||| || ||||||||||| ||||||    
T  17404209 tagaaagttggatgaggttgaagattcctaattttctacaaata 17404166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1287 - 1413
Target Start/End: Original strand, 20478255 - 20478379
Alignment:
Q  1287 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaa 1385  Q
    |||| |||||||||||||  |||||| ||||||| |||| ||||| |||||| ||||| |||| |||| ||| ||||||||||||||  ||||||| | |    
T  20478255 aaaatgggtcgcaaatca--tatacataattctacaacactcaaactaccggcgcgagggaaacgagttatacagaatgtatgtaaactgatttgtag-a 20478351  T
Q  1386 ccacctttatttttaatgcattgtattt 1413  Q
    ||||||||| |||||||| |||| ||||    
T  20478352 ccacctttaattttaatgaattgcattt 20478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 977 - 1097
Target Start/End: Original strand, 25519999 - 25520118
Alignment:
Q  977 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 1076  Q
    ||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  ||||||||     
T  25519999 tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc 25520097  T
Q  1077 ggtcaacattggttgattttt 1097  Q
     ||||||||| ||||| ||||    
T  25520098 agtcaacattagttgactttt 25520118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1285 - 1398
Target Start/End: Original strand, 29891263 - 29891376
Alignment:
Q  1285 gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta-aaggatttgtcg 1383  Q
    ||||||||||||||| ||||| |||| ||| || ||||||| |||||||| ||| ||||||||||||| | ||| | |||||||||| |  ||| |||||    
T  29891263 gaaaaacgggtcgcagatcacttatagaaa-ttataaaacactcaaagtatcggcgcgagagaaaagatttatacaaaatgtatgtacactgatatgtcg 29891361  T
Q  1384 aaccacctttatttt 1398  Q
    |||||| ||||||||    
T  29891362 aaccacatttatttt 29891376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1343 - 1394
Target Start/End: Original strand, 28760672 - 28760724
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 1394  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  28760672 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1345 - 1431
Target Start/End: Original strand, 17162015 - 17162101
Alignment:
Q  1345 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 1431  Q
    |||||||| ||||| |||||||||||||   |||||||||| ||||||||| | |||||||| || | ||||||||||||||| ||||    
T  17162015 agaaaagaatcatacagaatgtatgtaatctgatttgtcgagccaccttta-tattaatgcaatgcaatttacctttcctttaagttt 17162101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1345 - 1446
Target Start/End: Complemental strand, 17636791 - 17636690
Alignment:
Q  1345 agaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaa 1443  Q
    |||||||||||||| | |||||||||||   ||||||||||||||||||||   ||||||||  | | ||||||||| ||||| ||||||||  ||||||    
T  17636791 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaaggcaatttaccttttctttaagtttctgcgttttaaa 17636693  T
Q  1444 ctt 1446  Q
    |||    
T  17636692 ctt 17636690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 4e-85; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 4e-85
Query Start/End: Original strand, 1203 - 1470
Target Start/End: Original strand, 19217911 - 19218177
Alignment:
Q  1203 tttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtcgcaaa 1301  Q
    |||||||||||| ||| ||||||| | |||||||| |||||||||||  ||| | | | ||||| |||||  |||||||||||  |||||||||||||||    
T  19217911 tttgtctacatgaaaggagtgctggtcgtgggattagtttctttccag-ttattttttatgtataaataactgttttccatagggaaaacgggtcgcaaa 19218009  T
Q  1302 tcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 1401  Q
    ||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19218010 tcacctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaa 19218108  T
Q  1402 tgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa 1470  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  19218109 tgcattgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-56
Query Start/End: Original strand, 1198 - 1456
Target Start/End: Original strand, 20064388 - 20064653
Alignment:
Q  1198 aagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaacgggtc 1296  Q
    ||||| |||||||||||||||  ||||||||||||||||| |||||||||||  ||| |  || ||||| ||||| ||||||||||||  ||||||||||    
T  20064388 aagcggttgtctacatggaaggtgtgctgattgtgggattagtttctttccac-ttatttactatgtataaataatagttttccatagggaaaacgggtc 20064486  T
Q  1297 gcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatt 1396  Q
    ||||||| |||||||| |||||||||||| | |||||||||| || |||||||||||| ||||| |||||||||||| ||||||| ||||||||||||||    
T  20064487 gcaaatcgcctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgtatgtaaatgatttgttgaaccacctttatt 20064586  T
Q  1397 tttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 1456  Q
    |||||||||       || ||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20064587 tttaatgcacttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 1190 - 1456
Target Start/End: Complemental strand, 20061075 - 20060802
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaaa 1289  Q
    ||||||||||||| |||| |||||| ||  |||| |||| |||||||| ||||||||| || ||| |  || ||||| ||| | ||||||||||||   |    
T  20061075 tgggagacaagcgattgtgtacatgtaatgagtgatgatcgtgggattagtttctttc-aacttacttcctatgtataaatgatagttttccatagggta 20060977  T
Q  1290 -acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
     |||||| ||||||| |||||||| ||||||||||||||  || |||||| || |||||||||||||||||| |||||||||||||||||||||||||||    
T  20060976 gacgggttgcaaatcgcctatacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaacca 20060877  T
Q  1389 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 1456  Q
    |||||||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20060876 cctttatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 1190 - 1405
Target Start/End: Complemental strand, 20713443 - 20713228
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||| ||||||||| || ||| |  || ||||| ||||| ||||||||||||  ||    
T  20713443 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgggattagtttctttc-aacttatttcctatgtataaataatagttttccatagggaa 20713345  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    ||||||||||||||| | |||||| |||||||||||| || || |||||  || ||||||||||||||||||||||||||||||  ||||||| |||| |    
T  20713344 aacgggtcgcaaatcgcatatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgtatgtaacagatttgttgaacaa 20713245  T
Q  1389 cctttatttttaatgca 1405  Q
    |||||||||||||||||    
T  20713244 cctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 1189 - 1405
Target Start/End: Original strand, 23210024 - 23210240
Alignment:
Q  1189 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-a 1287  Q
    |||||||||||||| ||||||| ||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||| ||||| ||||| ||||||  |    
T  23210024 atgggagacaagcggttgtctaaatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaataatagtttcccataggga 23210122  T
Q  1288 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    |||| |||||||||||   |||||| |||||||||||| || ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||    
T  23210123 aaacaggtcgcaaatcgtatatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaacc 23210222  T
Q  1388 acctttatttttaatgca 1405  Q
    || |||||||||||||||    
T  23210223 acttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 6e-47
Query Start/End: Original strand, 1190 - 1456
Target Start/End: Original strand, 20058550 - 20058824
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 1288  Q
    ||||||||||||| |||| | |||||||| ||||||||| |||||||| |||| ||| | | ||| |  || ||||| ||| | ||||||||||| |  |    
T  20058550 tgggagacaagcggttgtttgcatggaaggagtgctgatcgtgggattagttttttttccacttacttcctatgtataaatgatagttttccataaggta 20058649  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
     || ||| ||||||| ||||| |||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||| |||||||||||||    
T  20058650 gacaggttgcaaatcgcctatgcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaacca 20058749  T
Q  1389 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 1456  Q
    |||||||||||||||||       |||||||||   |||  |||| |||||||||||||||||||||||| ||||    
T  20058750 cctttatttttaatgcaattgcatttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 972 - 1179
Target Start/End: Original strand, 20064063 - 20064265
Alignment:
Q  972 ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt 1071  Q
    ||||| ||||||||||||| |||||| |||| ||   ||  ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||    
T  20064063 ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt 20064159  T
Q  1072 aatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagcattgaaaagt 1171  Q
    ||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||| | |||||||||||| ||||  | ||||||    
T  20064160 aatgtggtcaacatcagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagag-ttcgacgagatgttggacctagc-gtaaaaagt 20064257  T
Q  1172 ctcgaagc 1179  Q
    ||||||||    
T  20064258 ctcgaagc 20064265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 1192 - 1405
Target Start/End: Complemental strand, 25951528 - 25951315
Alignment:
Q  1192 ggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aaaa 1290  Q
    ||||||||||| ||||||||||||||| |||| |||| ||| |||| |||||||| | | ||| |  |  ||||| ||||| ||||||||||||  ||||    
T  25951528 ggagacaagcggttgtctacatggaaggagtgttgatcgtgagattagtttcttttccacttatttccgatgtataaataatagttttccataggtaaaa 25951429  T
Q  1291 cgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacc 1390  Q
    | ||||| ||||| | |||||| |||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||||      
T  25951428 caggtcgtaaatcgcttatacataattctaaaacactcaaagtaccg-acagagagaaaagagtcataaagaatgtatgtaaaagatttgtcgaaccaat 25951330  T
Q  1391 tttatttttaatgca 1405  Q
    |||| | ||||||||    
T  25951329 tttactcttaatgca 25951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 1041 - 1161
Target Start/End: Complemental strand, 25951783 - 25951664
Alignment:
Q  1041 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 1140  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  |||||||||||  ||||||||||| ||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttttctctaatcaaaggag-tt 25951685  T
Q  1141 caaagagatgttggacttagc 1161  Q
    ||| || |||||||| |||||    
T  25951684 caacgaaatgttggatttagc 25951664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 5e-32
Query Start/End: Original strand, 1042 - 1161
Target Start/End: Original strand, 20058300 - 20058418
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1141  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagag-ttc 20058398  T
Q  1142 aaagagatgttggacttagc 1161  Q
     | |||||||||||| ||||    
T  20058399 gacgagatgttggacctagc 20058418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 5e-29
Query Start/End: Original strand, 1041 - 1139
Target Start/End: Complemental strand, 21165655 - 21165557
Alignment:
Q  1041 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 1139  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||||||||||||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtctttccttcaatcaaaggagtt 21165557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 1039 - 1161
Target Start/End: Original strand, 23209772 - 23209893
Alignment:
Q  1039 atttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagt 1138  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||||||||| ||||||||     
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagtattttcttcaaacaaaggag- 23209870  T
Q  1139 ttcaaagagatgttggacttagc 1161  Q
    ||| | ||||||||||| |||||    
T  23209871 ttcgacgagatgttggatttagc 23209893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 1274 - 1374
Target Start/End: Original strand, 23379373 - 23379474
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  23379373 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 23379472  T
Q  1373 ag 1374  Q
    ||    
T  23379473 ag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 1287 - 1446
Target Start/End: Original strand, 17167275 - 17167433
Alignment:
Q  1287 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 1386  Q
    |||||||||| |||||||| |||| ||| ||||| ||||    ||||||| | ||||||||||||||| ||| | |||||||||||||||||||||||||    
T  17167275 aaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaatacaaaatgtatgtaaaggatttgtcgaac 17167373  T
Q  1387 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
    ||||||||||||||||| | || | |||| |||| ||||| |||||| || ||| |||||    
T  17167374 cacctttatttttaatgtaatgcaatttatcttttctttaagtttctacacttttaactt 17167433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1340 - 1446
Target Start/End: Original strand, 19924022 - 19924128
Alignment:
Q  1340 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 1439  Q
    ||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||| |||| |||| ||    
T  19924022 gcgagagaaaagagttatacagaatgtatataaaagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtttatgcactt 19924121  T
Q  1440 taaactt 1446  Q
    | |||||    
T  19924122 ttaactt 19924128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1298 - 1494
Target Start/End: Complemental strand, 23355777 - 23355581
Alignment:
Q  1298 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttattt 1397  Q
    ||||| ||||||||| ||||||| |||| |  ||||||||| |  || ||||| ||||||| | ||| |||||||| ||||| ||  |||||||||| ||    
T  23355777 caaattacctatacagaattctagaacacttgaagtaccggcgttagggaaaatagtcatacaaaatatatgtaaatgatttttcagaccacctttactt 23355678  T
Q  1398 ttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgcca 1494  Q
    |||||||| || | |||| |||| ||||| ||||||||||||| ||||| || |||| ||||||| |||||||| ||||| |  ||||| |||||||    
T  23355677 ttaatgcaatgcaatttatcttttctttatgtttctgcaattttaactttattcctttactttgcatttaaaacgtttttcccatcgaatgacgcca 23355581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1313 - 1446
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  1313 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 1412  Q
    |||||||| |||| || || |||||  ||||||||||||||| |||   ||| ||||||||||||||||| |||||||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  1413 ttacctttcctttacgtttctgcaatttaaactt 1446  Q
    ||| |||| ||||| ||||||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 1042 - 1161
Target Start/End: Complemental strand, 20061323 - 20061207
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1141  Q
    |||| |||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||| ||||| ||||||||||| ||||| | |||    
T  20061323 tgtttgctggtattt-caccagcctcgtttaatatggtcaccattagttgacttttactcttgcaggaatcgaagt-ttttcttcaatgaaaggtg-ttc 20061227  T
Q  1142 aaagagatgttggacttagc 1161  Q
     | |||||||||||||||||    
T  20061226 gacgagatgttggacttagc 20061207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 353 - 420
Target Start/End: Complemental strand, 24879580 - 24879513
Alignment:
Q  353 ggccctaggaaggcgtgaacagtaccagagacagagtatggaataagtacatgagatttccaaatctt 420  Q
    |||||||| |||| || ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  24879580 ggccctagaaaggtgtaaacagtaccagagacagagtatggaatgagtacctgagatttccaaatctt 24879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1340 - 1446
Target Start/End: Original strand, 19926749 - 19926855
Alignment:
Q  1340 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 1439  Q
    ||||||||||| ||| ||| ||||||||  |||| ||||||||||||||||||||||||||||||| || | |||| |||| ||||| |||| |||| ||    
T  19926749 gcgagagaaaatagttatacagaatgtaaataaaagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttatgcactt 19926848  T
Q  1440 taaactt 1446  Q
    | |||||    
T  19926849 ttaactt 19926855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1292 - 1425
Target Start/End: Complemental strand, 17987619 - 17987487
Alignment:
Q  1292 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccac 1389  Q
    |||||||||||||  |||||| |||||||||||| ||||| |||||  | | || |||| |||| ||| |||||||||||| |  ||||||| || ||||    
T  17987619 gggtcgcaaatca--tatacagaattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtaga-ccac 17987523  T
Q  1390 ctttatttttaatgcattgtattttacctttccttt 1425  Q
    |||||||||||||||| || ||||||||||||||||    
T  17987522 ctttatttttaatgcaatgcattttacctttccttt 17987487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1042 - 1086
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 1086  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 1088 - 1161
Target Start/End: Complemental strand, 20713647 - 20713575
Alignment:
Q  1088 gttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagc 1161  Q
    ||||| ||||| ||||||||||||  |||||||||||||||||||||||| ||| | ||||| |||||||||||    
T  20713647 gttgacttttattcttgcaggaatcaaagtcttttcttcaatcaaaggag-ttcgacgagatattggacttagc 20713575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1015 - 1123
Target Start/End: Complemental strand, 24878889 - 24878782
Alignment:
Q  1015 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattga 1114  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| |||||   ||||| |||| ||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgacttttatctttgcaagaatcga 24878791  T
Q  1115 agtcttttc 1123  Q
    |||||||||    
T  24878790 agtcttttc 24878782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1011 - 1086
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  1011 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 1086  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1011 - 1121
Target Start/End: Complemental strand, 22011588 - 22011479
Alignment:
Q  1011 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaaca-ttggttga-tttttactcttgcagg 1108  Q
    ||||||||||||||||| |  ||||||| ||||||||   ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||| |||||||    
T  22011588 cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatttggttgactttttact-ttgcagg 22011492  T
Q  1109 aattgaagtcttt 1121  Q
    ||| |||| ||||    
T  22011491 aatcgaaggcttt 22011479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1463 - 1494
Target Start/End: Complemental strand, 24878319 - 24878288
Alignment:
Q  1463 ttttaaaaccttttttctgtcgaaagacgcca 1494  Q
    ||||||||||||||||||||||||||||||||    
T  24878319 ttttaaaaccttttttctgtcgaaagacgcca 24878288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1345 - 1394
Target Start/End: Original strand, 31533052 - 31533102
Alignment:
Q  1345 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 1394  Q
    |||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  31533052 agaaaagagtcatagagaatgtatgtaatctgatttgtcgaaccaccttta 31533102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 5e-78; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 5e-78
Query Start/End: Original strand, 1190 - 1496
Target Start/End: Complemental strand, 15687166 - 15686859
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaa-a 1288  Q
    ||||||||||||| ||| |||||| |||| |||| |||| |||||||| |||||||||||  ||| | ||| ||||| ||||||||||||||||||   |    
T  15687166 tgggagacaagcggttgcctacatagaaggagtgatgatcgtgggattagtttctttccag-ttattttctatgtataaataagagttttccatagtgga 15687068  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaac-attcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    |||| ||||||||||||||||||  ||||||||||  | || ||||||||  |||||||||||||||| ||||||||||||| || |||||| | | |||    
T  15687067 aacgagtcgcaaatcacctatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatgtatgaaatggatttttaggacc 15686968  T
Q  1388 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaa 1487  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  15686967 acctttatttttaatgcattgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaaccctttttctatcgaaa 15686868  T
Q  1488 gacgccaca 1496  Q
     ||||||||    
T  15686867 cacgccaca 15686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 3e-76
Query Start/End: Original strand, 1262 - 1489
Target Start/End: Original strand, 24699049 - 24699275
Alignment:
Q  1262 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 1360  Q
    ||||| ||||| ||||||||||||  ||||||||||||||||| |||||||| |||||||||||| || ||||||||| ||||||||||||| |||  ||    
T  24699049 tgtataaataatagttttccatagggaaaacgggtcgcaaatcccctatacagaattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aa 24699146  T
Q  1361 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 1460  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||    
T  24699147 gaatgtatttaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtttatgcaatttaaacttaatgcctttacttt 24699246  T
Q  1461 gcttttaaaaccttttttctgtcgaaaga 1489  Q
    |||| | ||||| ||||||||||||||||    
T  24699247 gcttatgaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 7e-65
Query Start/End: Original strand, 1274 - 1490
Target Start/End: Complemental strand, 26011055 - 26010836
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||    
T  26011055 agttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaagaatgtatgtaa 26010956  T
Q  1373 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa---tttaaacttaatgccttaactttgcttttaaa 1469  Q
    | ||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||    |||||||||||||||| ||||||||||||||    
T  26010955 atgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttactttgcttttaaa 26010856  T
Q  1470 accttttttctgtcgaaagac 1490  Q
    | |  ||||||||||||||||    
T  26010855 aac-cttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 4e-54
Query Start/End: Original strand, 1294 - 1477
Target Start/End: Original strand, 13428733 - 13428914
Alignment:
Q  1294 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttt 1393  Q
    ||||||||||||||||| ||  |||||||||| || ||||||||  | ||||||||||||| |||||||||||||||||||||||||| ||||||| |||    
T  13428733 gtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacattt 13428830  T
Q  1394 atttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttt 1477  Q
    ||| |||||||||||||||||| ||||||||||  ||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13428831 attattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccctttt 13428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 944 - 1122
Target Start/End: Original strand, 9033046 - 9033225
Alignment:
Q  944 gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt 1041  Q
    |||||||||||||||| |||||||    ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  ||||    
T  9033046 gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt 9033144  T
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1122  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttgacttttactcttgcaggaattgaagtctttt 9033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 9e-49
Query Start/End: Original strand, 1189 - 1494
Target Start/End: Original strand, 4765605 - 4765916
Alignment:
Q  1189 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatag-aa 1287  Q
    |||||||||||||  ||||||||||||||| ||||  ||| |||||||| ||   | | | | ||| | ||| ||||| ||||  |||||||||||| ||    
T  4765605 atgggagacaagcagttgtctacatggaagaagtgtagatcgtgggatt-gtacttgttctagttattttctatgtataaatagtagttttccataggaa 4765703  T
Q  1288 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaat----gtatgtaaaggatttgtcg 1383  Q
    ||| ||||||||||||||||||| |  ||||||||||| |  | ||||  | |||||||||||||||||||||||||    ||||||||| |||||||||    
T  4765704 aaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaagaattaatgtatgtaaatgatttgtcg 4765803  T
Q  1384 aaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctg 1481  Q
    ||||||||||| ||||||||||||||| ||||  ||||||||| |||| ||||| ||||||||||||||||| ||||||||||| |||||| ||||  ||    
T  4765804 aaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgcctttactttgcttttaaaaacccttttcatg 4765903  T
Q  1482 tcgaaagacgcca 1494  Q
    |||||||||||||    
T  4765904 tcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 100; E-Value: 9e-49
Query Start/End: Original strand, 1274 - 1469
Target Start/End: Complemental strand, 4769937 - 4769742
Alignment:
Q  1274 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 1373  Q
    ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| || || |||| | || ||||||||||||||||||||||||||||||     
T  4769937 agttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaagaatgtatgtaac 4769838  T
Q  1374 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaa 1469  Q
    | |||| ||||||||||||||||| |||||||||||||||   |||||||||| |||| || ||||||||||||||||||| ||||||||||||||    
T  4769837 gaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttgcttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 97; E-Value: 6e-47
Query Start/End: Original strand, 1190 - 1405
Target Start/End: Complemental strand, 7149005 - 7148790
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaaa 1289  Q
    ||||||||||| | ||||||||||||||| |||| |||| |||||||| |||||||||||| ||| |  || ||||| ||||  |||||||||||| |||    
T  7149005 tgggagacaagtggttgtctacatggaaggagtgttgatcgtgggattagtttctttccaa-ttatttcctatgtataaatagtagttttccataggaaa 7148907  T
Q  1290 ac-gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    || ||||| |||||  |||||||| |||||||||| | |  ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7148906 accgggtcacaaattgcctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 7148807  T
Q  1389 cctttatttttaatgca 1405  Q
    | |||| ||||||||||    
T  7148806 cttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 1274 - 1496
Target Start/End: Original strand, 4832516 - 4832740
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||||  |||| || |||||||||||||||||| |||||||||||| || ||| |  || | ||||||||||||||| ||||||| ||| |||    
T  4832516 agttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaagaatatatttaa 4832615  T
Q  1373 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa-c 1471  Q
    ||||| ||  | ||||||||||| |||||||||||||||||||  ||||||||  |||| |||||||||||||||||| ||| || ||||||| |||| |    
T  4832616 aggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttaccttgctttaaaaacc 4832715  T
Q  1472 cttttttctgtcgaaagacgccaca 1496  Q
    ||||||||| |||||||||| ||||    
T  4832716 cttttttctttcgaaagacgtcaca 4832740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 1190 - 1413
Target Start/End: Original strand, 9033398 - 9033622
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccatagaaa 1288  Q
    ||||| ||||||| ||||||||||||| | |||| |||| ||| |||| |||||||||||  ||| | |||| ||||| ||||| |||||||||||| ||    
T  9033398 tgggatacaagcggttgtctacatggagggagtgttgatcgtgtgattagtttctttccac-ttatt-tcttatgtataaataatagttttccataggaa 9033495  T
Q  1289 aacgggtcgcaaatcacctatacaaaattct-aaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    ||||||||||| ||| |||||||| |||| | |||||| || ||||| ||| || ||||||||  |||| ||||||||||||||||||||||||| ||||    
T  9033496 aacgggtcgcatatcgcctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgtatgtaaaggatttgtcaaacc 9033595  T
Q  1388 acctttatttttaatgca-ttgtattt 1413  Q
    |||||||||||||||||| ||||||||    
T  9033596 acctttatttttaatgcacttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 1190 - 1402
Target Start/End: Original strand, 29614512 - 29614724
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||||| |||||||| ||  ||| |  || ||||| || || ||||||||||||  ||    
T  29614512 tgggcgacaagcagttgtctacatggaaggagtgctgattgtgggattagtttcttttcat-ttatttcctatgtataaa-aatagttttccatagggaa 29614609  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaa-aacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    || |||||||||||| |||||| | |||||||| |||| || ||||||||   | |||||||||||||||||| ||||||||||||||||||||||||||    
T  29614610 aatgggtcgcaaatcgcctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgtaaaggatttgtcgaacc 29614709  T
Q  1388 acctttatttttaat 1402  Q
    |||||||||||||||    
T  29614710 acctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 974 - 1163
Target Start/End: Original strand, 4765286 - 4765475
Alignment:
Q  974 ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 1073  Q
    |||||||||||  ||||||||||| |  | | | ||| |||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||    
T  4765286 ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa 4765384  T
Q  1074 tgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttcaaagagatgttggacttagcat 1163  Q
    |||| |||||||| ||||| |||||||||||||||||| ||||| |||| ||||||   |||||||||| | || ||||||||||||||||    
T  4765385 tgtgatcaacattagttgacttttactcttgcaggaatcgaagttttttccttcaacttaaggagtttcgacgaaatgttggacttagcat 4765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 1298 - 1440
Target Start/End: Complemental strand, 23378631 - 23378488
Alignment:
Q  1298 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttg-tcgaaccacctttatt 1396  Q
    |||||||| ||||||||||||||||| | || ||||| ||| ||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||    
T  23378631 caaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcatacataatgtatgtaaaggatttgtttgaaccacctttatt 23378532  T
Q  1397 tttaatgcattgtattttacctttcctttacgtttctgcaattt 1440  Q
    ||||||||| || | |||| |||||||||| |||||| ||||||    
T  23378531 tttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 945 - 1158
Target Start/End: Complemental strand, 4770307 - 4770096
Alignment:
Q  945 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 1044  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||    
T  4770307 tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttca-ggggggtaaattgt 4770210  T
Q  1045 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 1144  Q
    ||||||||| ||| | ||| ||| |||||||||| ||||||| ||| | |||||  ||||||||||| | ||||||||||||||   ||||| |||  |     
T  4770209 tagctggtaattttaacagactcgtttaatgtggccaacattcgtttacttttatccttgcaggaatcgtagtcttttcttcaacataaggaattttgac 4770110  T
Q  1145 gagatgttggactt 1158  Q
    ||||||||||||||    
T  4770109 gagatgttggactt 4770096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 1274 - 1405
Target Start/End: Original strand, 16242937 - 16243069
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| || |||||||   |||||||||||||||||||||||||||||||||    
T  16242937 agttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaatgtatgtaa 16243036  T
Q  1373 aggatttgtcgaaccacctttatttttaatgca 1405  Q
    || |||||||||||||| |||||||||||||||    
T  16243037 agcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1043 - 1161
Target Start/End: Original strand, 24698727 - 24698845
Alignment:
Q  1043 gttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttca 1142  Q
    |||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||||||| ||| |||||||||||||||||||||||   ||||||||||     
T  24698727 gttagctgataatttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttttcttcaacataaggagtttcg 24698826  T
Q  1143 aagagatgttggacttagc 1161  Q
    | |||||||| ||||||||    
T  24698827 acgagatgttagacttagc 24698845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1042 - 1122
Target Start/End: Complemental strand, 15687420 - 15687340
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1122  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtctttt 15687340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1044 - 1137
Target Start/End: Original strand, 16242605 - 16242699
Alignment:
Q  1044 ttagctggtattttcaccagcctcatttaatgtggtcaacattggtt-gatttttactcttgcaggaattgaagtcttttcttcaatcaaaggag 1137  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||  ||||||||||| |||||||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttttcctcaatcaaaggag 16242699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1042 - 1160
Target Start/End: Original strand, 29614037 - 29614155
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagttt 1140  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| ||||  ||| | |||||||||| | |||||| ||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaatcaaagtttttttcttcaaacgaaggag-tt 29614135  T
Q  1141 caaagagatgttggacttag 1160  Q
    | | ||||||| ||||||||    
T  29614136 cgacgagatgtaggacttag 29614155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1313 - 1436
Target Start/End: Original strand, 27304424 - 27304547
Alignment:
Q  1313 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 1412  Q
    |||||||| |||| |||||||| |||  |||||||||||| | ||| | |||||||||| || ||||||| |||||| ||||||||||||||| || | |    
T  27304424 aaattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaat 27304523  T
Q  1413 ttacctttcctttacgtttctgca 1436  Q
    |||  ||| ||||| |||||||||    
T  27304524 ttatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1055 - 1163
Target Start/End: Original strand, 4832190 - 4832300
Alignment:
Q  1055 tttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtctttt-cttcaatcaaaggagtttcaaagagatgtt 1152  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||  |||| |||||||| |||||||||| ||| ||    ||||||||  | ||||||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttgactttttatctttgcaggaatcgaagtctttttcttgaacttgaggagttttgacgagatgtt 4832289  T
Q  1153 ggacttagcat 1163  Q
    |||||||||||    
T  4832290 ggacttagcat 4832300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1362 - 1436
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  1362 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 1436  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1362 - 1436
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  1362 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 1436  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1385 - 1431
Target Start/End: Complemental strand, 13409879 - 13409833
Alignment:
Q  1385 accacctttatttttaatgcattgtattttacctttcctttacgttt 1431  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13409879 accacctttatttttaatgcaatgcattttacctttcctttaagttt 13409833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1042 - 1125
Target Start/End: Original strand, 13428406 - 13428488
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 1125  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| ||||| |||  || ||||| |||| ||||| |||||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttgactttatct-ttgcatgaatcgaagtgttttctt 13428488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 1e-75; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 1268 - 1496
Target Start/End: Original strand, 22397548 - 22397777
Alignment:
Q  1268 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatg 1365  Q
    |||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||||||||||| ||||||||||||||    
T  22397548 aataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaagaatg 22397647  T
Q  1366 tatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcc-tttacgtttctgcaatttaaacttaatgccttaactttgctt 1464  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    ||||| |||    
T  22397648 tatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agacttttctt 22397745  T
Q  1465 ttaaaaccttttttctgtcgaaagacgccaca 1496  Q
    |||||||||||||| |||||||||||||||||    
T  22397746 ttaaaaccttttttttgtcgaaagacgccaca 22397777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-56
Query Start/End: Original strand, 1190 - 1405
Target Start/End: Complemental strand, 16177519 - 16177304
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 1288  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||| | ||| | ||| ||||| ||||  ||||||||||| | ||    
T  16177519 tgggagacaagcggttgtctacatggaaggagtgctgattgtgggattagtttctttcc-acttattttctatgtataaatattagttttccatatggaa 16177421  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||      ||||||||||||||||||||||||||||||||||||| ||||||||    
T  16177420 aacgggtcgcaaataacctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaaaggatttttcgaacca 16177321  T
Q  1389 cctttatttttaatgca 1405  Q
    | |||||||||||||||    
T  16177320 catttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 4e-45
Query Start/End: Original strand, 945 - 1158
Target Start/End: Complemental strand, 17525444 - 17525233
Alignment:
Q  945 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 1044  Q
    |||||||||||||| |||||||||| ||||| ||||||||    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  17525444 tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt 17525347  T
Q  1045 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 1144  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| |  |||||| |||| |||||||||||   ||| ||||||||     
T  17525346 tagctggtaatttcaccagtctcatttaatgtggtcaacattagttgacttttactcctctaggaatcgaagccttttcttcaacttaagaagtttcaac 17525247  T
Q  1145 gagatgttggactt 1158  Q
    |||||||| |||||    
T  17525246 gagatgttagactt 17525233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 9e-43
Query Start/End: Original strand, 1189 - 1401
Target Start/End: Complemental strand, 15830238 - 15830026
Alignment:
Q  1189 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaa 1287  Q
    ||||||||||| |  ||||||||||||||  |||||| ||| ||||||| |||||||||||  ||| | ||| ||||| ||||| |||||| |||| | |    
T  15830238 atgggagacaaacagttgtctacatggaaagagtgctaattatgggattagtttctttccac-ttattttctatgtataaataatagttttgcataagga 15830140  T
Q  1288 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||| | | | ||||||||||||||||||| |||||||||||| ||||||||||| |    
T  15830139 aaacgggtcgcaaatcgcctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaatc 15830040  T
Q  1388 acctttatttttaa 1401  Q
    || |||||||||||    
T  15830039 acttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 1287 - 1487
Target Start/End: Complemental strand, 17524998 - 17524797
Alignment:
Q  1287 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 1386  Q
    ||||| |||||||||||||||||||| |||||||||||| || |||| | || | ||||||||||||||||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  1387 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctgtcg 1484  Q
     |||||||||||||||||||| || ||||  ||| ||||| |||||| ||| |||||| ||||| |||| |||||| |||| |||||||||||| | |||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaaccttttttttatcg 17524800  T
Q  1485 aaa 1487  Q
    |||    
T  17524799 aaa 17524797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 8e-34
Query Start/End: Original strand, 1274 - 1405
Target Start/End: Original strand, 1177214 - 1177349
Alignment:
Q  1274 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaaga----atgtatg 1369  Q
    |||||| ||||| ||||| || ||||||||| ||||||| |||||||||||| || ||||||  | |||||||||||||||||||||||    |||||||    
T  1177214 agttttgcataggaaaacaggacgcaaatcatctatacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatg 1177313  T
Q  1370 taaaggatttgtcgaaccacctttatttttaatgca 1405  Q
    ||||||||||||||||||||||||||||||||||||    
T  1177314 taaaggatttgtcgaaccacctttatttttaatgca 1177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 3e-30
Query Start/End: Original strand, 975 - 1103
Target Start/End: Original strand, 31125745 - 31125872
Alignment:
Q  975 tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 1074  Q
    ||||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||    
T  31125745 tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat 31125843  T
Q  1075 gtggtcaacattggttgatttttactctt 1103  Q
    |||||||||||| ||||| ||||||||||    
T  31125844 gtggtcaacattagttgacttttactctt 31125872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1313 - 1446
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  1313 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 1412  Q
    |||||||| |||| |||||||||||   |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  1413 ttacctttcctttacgtttctgcaatttaaactt 1446  Q
    ||| | || ||||| ||||||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 1313 - 1446
Target Start/End: Original strand, 17947890 - 17948023
Alignment:
Q  1313 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 1412  Q
    |||||||| ||||||| ||||| ||| || |||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || || | |    
T  17947890 aaattctacaacattcgaagtaacggcgcaagaggaaagagttatataaaatgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaat 17947989  T
Q  1413 ttacctttcctttacgtttctgcaatttaaactt 1446  Q
    ||| |||||||||| |||| |||| ||| |||||    
T  17947990 ttatctttcctttaagtttatgcatttttaactt 17948023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 1341 - 1446
Target Start/End: Original strand, 14762985 - 14763090
Alignment:
Q  1341 cgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 1440  Q
    |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||| || | |||| |||| ||||| ||||||||| |||    
T  14762985 cgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttctgcacttt 14763084  T
Q  1441 aaactt 1446  Q
     |||||    
T  14763085 taactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 948 - 1122
Target Start/End: Original strand, 22394009 - 22394179
Alignment:
Q  948 catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag 1047  Q
    ||||||||| || ||||||||| |||| |||||||||  ||||| ||||| |  | || |||  |||||||||| ||||| |||||||||||| ||||||    
T  22394009 catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag 22394106  T
Q  1048 ctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 1122  Q
     ||||| ||||||||||||  |||||||||||||||||| |||   ||||||||||||||||||  |||||||||    
T  22394107 ttggtaatttcaccagcct--tttaatgtggtcaacattagttccgttttactcttgcaggaatcaaagtctttt 22394179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 1e-20
Query Start/End: Original strand, 1190 - 1456
Target Start/End: Original strand, 31126065 - 31126351
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    ||||||||||||| ||||||||||||||| |||||| ||  ||||||| |||||||||||  ||| |  || ||||| ||||| |||||||| |||  ||    
T  31126065 tgggagacaagcgattgtctacatggaaggagtgctaatcttgggattagtttctttccac-ttatttcctatgtataaataatagttttccttagggaa 31126163  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataa------------agaatgtatgtaaagga 1376  Q
    |||||||| |||||| ||||||   |||||||||||| || ||||| |   || |||||||||||||||||            | |||||||||||||||    
T  31126164 aacgggtctcaaatctcctatatggaattctaaaacactcgaagtaacaacgcaagagaaaagagtcataaatctcatattttaaaatgtatgtaaagga 31126263  T
Q  1377 tttgtcgaaccacctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaattt-aaacttaatgccttaa 1456  Q
    |||| |||||||||||||||| |||||||       |||||||||  |||| ||||  ||||||||||||| ||||||||||| ||||    
T  31126264 tttgccgaaccacctttatttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcattaa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 1042 - 1126
Target Start/End: Complemental strand, 16177759 - 16177672
Alignment:
Q  1042 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttc 1126  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||| ||||||||||| ||||||  |||||||||||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttttcttc 16177672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1083 - 1160
Target Start/End: Original strand, 1176918 - 1176994
Alignment:
Q  1083 cattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttag 1160  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  1176918 cattagttgacttttactcttgcaggaatcgaaatcttttcttcaataaaaggag-ttcaacgagatgttggatttag 1176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1343 - 1444
Target Start/End: Complemental strand, 28712461 - 28712360
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 1441  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||   |||||||| |||| ||||||||| ||||| ||||||||  ||||    
T  28712461 agagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaatgtaatttaccttttctttaagtttctgcgtttta 28712363  T
Q  1442 aac 1444  Q
    |||    
T  28712362 aac 28712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1343 - 1394
Target Start/End: Original strand, 13002854 - 13002906
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 1394  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  13002854 agagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccaccttta 13002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1053 - 1139
Target Start/End: Complemental strand, 32784534 - 32784447
Alignment:
Q  1053 attttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtc-ttttcttcaatcaaaggagtt 1139  Q
    ||||||| ||| ||||||||||||||| || ||| ||||| ||||||| || ||||||||||| || |||||| ||||||| ||||||    
T  32784534 attttcatcagtctcatttaatgtggttaatattagttgacttttacttttacaggaattgaaatctttttctacaatcaatggagtt 32784447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1361 - 1431
Target Start/End: Complemental strand, 25945916 - 25945846
Alignment:
Q  1361 gaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 1431  Q
    |||||||||||||  ||||||| || |||||||||||||||||||| || ||||||||| ||||||| ||||    
T  25945916 gaatgtatgtaaactgatttgtaga-ccacctttatttttaatgcaatgcattttacctctcctttaagttt 25945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1345 - 1394
Target Start/End: Original strand, 24154179 - 24154229
Alignment:
Q  1345 agaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 1394  Q
    |||||||||||||| | ||||||||||||  ||||||||||||||||||||    
T  24154179 agaaaagagtcatacaaaatgtatgtaaactgatttgtcgaaccaccttta 24154229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1343 - 1387
Target Start/End: Original strand, 10163272 - 10163317
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaacc 1387  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  10163272 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaacc 10163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 7e-68; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 7e-68
Query Start/End: Original strand, 1262 - 1496
Target Start/End: Complemental strand, 11361830 - 11361595
Alignment:
Q  1262 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 1360  Q
    ||||| |||||||||||||| |||  ||||| ||||| | |||||||||||| |||||||||||| || |  |||||  ||||| ||||||||| | |||    
T  11361830 tgtataaataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattctaaaacactcgacttaccgacgcgagggaaaagagttacaaa 11361731  T
Q  1361 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaacttt 1460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||    
T  11361730 gaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcatttaaatttctgcaatttaaacttaatgcctttacttt 11361631  T
Q  1461 gcttttaaaaccttttttctgtcgaaagacgccaca 1496  Q
    ||||||||||| ||||| ||||| |||||| |||||    
T  11361630 gcttttaaaacttttttcctgtcaaaagacaccaca 11361595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-62
Query Start/End: Original strand, 1288 - 1489
Target Start/End: Original strand, 9409168 - 9409370
Alignment:
Q  1288 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    |||||||||||||||||| |||| | |||||||||||| || ||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||    
T  9409168 aaacgggtcgcaaatcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaacc 9409267  T
Q  1388 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgc-ttttaaaaccttttttctgtcgaa 1486  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | || ||||||| ||||||||||  |||||||||| |    
T  9409268 acctttatttttaatgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgta 9409367  T
Q  1487 aga 1489  Q
    |||    
T  9409368 aga 9409370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 9e-49
Query Start/End: Original strand, 1041 - 1184
Target Start/End: Complemental strand, 11362160 - 11362017
Alignment:
Q  1041 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 1140  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||   |||||||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttttcttcaacttaaggagttt 11362061  T
Q  1141 caaagagatgttggacttagcattgaaaagtctcgaagccttaa 1184  Q
    ||| |||||||||||||||||||  |||| ||||||||||||||    
T  11362060 caacgagatgttggacttagcatgaaaaattctcgaagccttaa 11362017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 5e-29
Query Start/End: Original strand, 1274 - 1446
Target Start/End: Complemental strand, 16675259 - 16675086
Alignment:
Q  1274 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| || ||||||||| ||||||||| ||||| ||| |||||||||||||    
T  16675259 agttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacagaatgtatgtaa 16675161  T
Q  1373 ag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
    |  ||||||||||||||| |||||||| |||||| |  | ||||||||| ||||| ||||||||| |||||||||    
T  16675160 aatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1343 - 1405
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 1405  Q
    |||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1274 - 1446
Target Start/End: Complemental strand, 4697626 - 4697454
Alignment:
Q  1274 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||| | |||| | |||||||||||| |||| ||| |||||||||| |||||| ||||| | ||||||| | ||| ||| | |||||||||||    
T  4697626 agttttccatatggaaaatgagtcgcaaatcacttatagaaa-ttctaaaacactcaaagcaccggcgtgagagaacaaagttatacaaaatgtatgtaa 4697528  T
Q  1373 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
       |||| |||||||||||||||  ||||||||| |  | ||||||||| ||||| |||| |||  |||||||||    
T  4697527 tctgattcgtcgaaccaccttta-ctttaatgcaatacaatttaccttttctttaagtttatgcgttttaaactt 4697454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1384 - 1431
Target Start/End: Original strand, 18558469 - 18558516
Alignment:
Q  1384 aaccacctttatttttaatgcattgtattttacctttcctttacgttt 1431  Q
    |||||||||||||||||||||| || ||||||| ||||||||| ||||    
T  18558469 aaccacctttatttttaatgcaatgcattttacatttcctttaagttt 18558516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1343 - 1393
Target Start/End: Original strand, 26654144 - 26654195
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttt 1393  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  26654144 agagaaaagagtcatacataatgtatgtaatatgatttgtcgaaccaccttt 26654195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1008 - 1086
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  1008 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 1086  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 2e-65; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-65
Query Start/End: Original strand, 1190 - 1451
Target Start/End: Complemental strand, 20146437 - 20146169
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccata-gaaa 1288  Q
    ||||||||||| | |||||||||| |||| |||| |||| |||||| | |||||||||||| ||| |  |||||||| ||||||||||||||||| | ||    
T  20146437 tgggagacaagtgattgtctacatagaaggagtgttgatcgtgggactagtttctttccaagttatttgctttgtataaataagagttttccatatggaa 20146338  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    || |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| | | ||||    
T  20146337 aatgggtcgcaaatcacctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgtatgtaaaggattttttggacca 20146239  T
Q  1389 cctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgc 1451  Q
     ||||||||||||||||       || |||||| ||||| ||||| ||||||||||||||||||||||||    
T  20146238 tctttatttttaatgcacttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 3e-55
Query Start/End: Original strand, 1190 - 1470
Target Start/End: Original strand, 11013745 - 11014027
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||||||||    | ||||||  |   | ||| |||||  ||| |||||||||||||  ||    
T  11013745 tgggagacaagtggttgtctacatggaagaagtgctgatcgtgggattgtactttttccagttatttttctatgtatatataggagttttccataggtaa 11013844  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    || |||| ||||||||||||||||||||| ||||||| || || |||| |   ||||||||||||||||||||||| ||||||||||||||||||| |||    
T  11013845 aatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaagaatatatgtaaaggatttgtcgagcca 11013944  T
Q  1389 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgcttttaaaa 1470  Q
    |||||||||||||||||||||| ||||  ||||||||| ||||| | || ||||||||||||||||| |||||||||||||||    
T  11013945 cctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactttgcttttaaaa 11014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 9e-46
Query Start/End: Original strand, 1190 - 1440
Target Start/End: Complemental strand, 33103273 - 33103021
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctt-tgtattaataagagttttccataga-- 1286  Q
    ||||||||||| | ||||||||||||||| |||| |||||||||||||    | ||||||  ||| | |  | ||||| ||||  ||||||||||||       
T  33103273 tgggagacaagtggttgtctacatggaagaagtgttgattgtgggattatgctttttccag-ttattttggtatgtataaatagtagttttccatagggg 33103175  T
Q  1287 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 1386  Q
    ||||| |||||||||||||||||||| |||||||||||| || ||||||||  | ||||||||||||||||| |||||||||||||||||||||||||||    
T  33103174 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatatagaatgtatgtaaaggatttgtcgaac 33103075  T
Q  1387 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 1440  Q
     || ||||||||||||||| || | |||| |||||||||| |||||||||||||    
T  33103074 tacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 5e-38
Query Start/End: Original strand, 1045 - 1182
Target Start/End: Complemental strand, 20146686 - 20146549
Alignment:
Q  1045 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 1144  Q
    |||||||||| |||||||| |||||||||||||| ||||||| ||| | | |||||||||||||||| ||||||||||  ||||||  ||||||||| |     
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttttactcaatcgtaggagtttcgac 20146587  T
Q  1145 gagatgttggacttagcattgaaaagtctcgaagcctt 1182  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20146586 gagatgttggacttagcattgaaaagtctcgaagcctt 20146549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 3e-33
Query Start/End: Original strand, 1042 - 1163
Target Start/End: Original strand, 11013493 - 11013614
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1141  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||||||||||||   ||||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttttcttcaacttaaggagtttc 11013592  T
Q  1142 aaagagatgttggacttagcat 1163  Q
     | |||||||||||||||||||    
T  11013593 gacgagatgttggacttagcat 11013614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1274 - 1446
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  1274 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| || ||||||  |  |||||||||||||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  1373 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
    ||||||||||||||||||||||||||||||||| || | || | |||| ||||| ||||||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 1275 - 1402
Target Start/End: Original strand, 20150435 - 20150563
Alignment:
Q  1275 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 1373  Q
    |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| || ||||||||  ||||||||||| ||||||| | |||| ||| |||    
T  20150435 gttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcatacaaaatgcatgcaaa 20150534  T
Q  1374 ggatttgtcgaaccacctttatttttaat 1402  Q
    ||||||||| |||||||||||||||||||    
T  20150535 ggatttgtcaaaccacctttatttttaat 20150563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 930 - 1123
Target Start/End: Original strand, 22619579 - 22619770
Alignment:
Q  930 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 1029  Q
    |||||||||| | | ||||||||||||||||||||||||  ||||| |||||| |  ||||| ||||| | || | ||||| |||||||||| ||||| |    
T  22619579 aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t 22619676  T
Q  1030 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 1123  Q
    |||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| ||||| |||||   |||||||||| |||||||||||    
T  22619677 tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgacttttatctttgcaggaatcgaagtcttttc 22619770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 7e-25
Query Start/End: Original strand, 1276 - 1426
Target Start/End: Original strand, 22607834 - 22607984
Alignment:
Q  1276 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 1374  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| || ||||||||  || |||||||||||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  1375 gatttgtcgaaccacctttatttttaatgcattgtattttacctttccttta 1426  Q
    ||| ||  ||||||||||||||||||||||| |||| |||| ||||||||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttccttta 22607984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1190 - 1402
Target Start/End: Original strand, 13201980 - 13202192
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtat-ctttgtattaataagagttttccatag-aa 1287  Q
    ||||||||||||| ||||||| ||||||| ||||||||| ||||  || |  | ||||||  ||| | | || ||||| ||||  |||||| ||||| ||    
T  13201980 tgggagacaagcggttgtctaaatggaagaagtgctgatcgtggagttaggctttttccag-ttattttgctatgtataaatagtagtttttcataggaa 13202078  T
Q  1288 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    ||||  |||||||||||| |||| ||| ||||| |||| || || |||||| ||||||||||| ||| ||| | ||||||||||||||||||||||||||    
T  13202079 aaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttatacataatgtatgtaaaggatttgtcgaacc 13202177  T
Q  1388 acctttatttttaat 1402  Q
    |||||||||||||||    
T  13202178 acctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1274 - 1432
Target Start/End: Complemental strand, 17615430 - 17615272
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| || |||||| || | |||| |||||||| | | | |||||||||||    
T  17615430 agttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataatgtatgtaa 17615332  T
Q  1373 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttc 1432  Q
    |||||||||||||| ||||||||||| |||||| || | || |||||| ||||| |||||    
T  17615331 aggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtttc 17615272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 1313 - 1403
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  1313 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatg 1403  Q
    |||||||| |||| || ||||||| ||||||||||||| ||| ||  | |  ||||||||| |||||||||||||||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1374 - 1446
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  1374 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
    ||||||||||||||||||||||||||||||||    | |||| |||| ||||| ||||||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1262 - 1325
Target Start/End: Original strand, 13232737 - 13232801
Alignment:
Q  1262 tgtattaataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 1325  Q
    ||||| ||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232737 tgtataaataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1385 - 1424
Target Start/End: Complemental strand, 20886610 - 20886571
Alignment:
Q  1385 accacctttatttttaatgcattgtattttacctttcctt 1424  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  20886610 accacctttatttttaatgcaatgcattttacctttcctt 20886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1344 - 1394
Target Start/End: Complemental strand, 23455242 - 23455191
Alignment:
Q  1344 gagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 1394  Q
    ||||||||||||||| | ||||||||||| | ||||||||||||||||||||    
T  23455242 gagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccaccttta 23455191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1041 - 1123
Target Start/End: Complemental strand, 17615766 - 17615684
Alignment:
Q  1041 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 1123  Q
    ||||||||  ||| ||||| ||| ||||||||||| |||||||||| ||||| |||||   |||||||||| ||| |||||||    
T  17615766 ttgttagcatgtaatttcaacagactcatttaatgcggtcaacattagttgacttttatctttgcaggaatcgaaatcttttc 17615684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 107; Significance: 6e-53; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 107; E-Value: 6e-53
Query Start/End: Original strand, 1190 - 1451
Target Start/End: Original strand, 5582 - 5851
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccataga-aa 1288  Q
    ||||||||||||| ||||||| ||||||| |||| |||| |||||||| ||||| |||||| ||| |  |||||||| ||||||||||||| ||||  ||    
T  5582 tgggagacaagcggttgtctatatggaaggagtgttgatcgtgggattagtttcattccaagttatttgctttgtataaataagagttttctatagggaa 5681  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    ||||||||| |||||||||||||| |||||||||||  |  ||||||||   ||||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  5682 aacgggtcgtaaatcacctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgtatgtaaagaatttgtcggacca 5781  T
Q  1389 cctttatttttaatgca-ttg------tattttacctttcctttacgtttctgcaatttaaacttaatgc 1451  Q
    ||||||||||||||||| |||      |||||| ||||| ||||| |||| |||||||||||||||||||    
T  5782 cctttatttttaatgcacttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

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Target: scaffold0555; HSP #2
Raw Score: 70; E-Value: 7e-31
Query Start/End: Original strand, 1049 - 1182
Target Start/End: Original strand, 5337 - 5470
Alignment:
Q  1049 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagaga 1148  Q
    |||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || ||||| ||||| |||||  ||| | |||| | ||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagttttttcatcaattgaagaattttcgacgaga 5436  T
Q  1149 tgttggacttagcattgaaaagtctcgaagcctt 1182  Q
    |||||||||||||||  |||||||||||||||||    
T  5437 tgttggacttagcatcaaaaagtctcgaagcctt 5470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 104; Significance: 4e-51; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 104; E-Value: 4e-51
Query Start/End: Original strand, 1190 - 1496
Target Start/End: Complemental strand, 21097 - 20793
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaaattagtatctttgtattaataagagttttccatagaaa- 1288  Q
    ||||||||||||| ||||| ||||||||| |||| |||| |||||||| |||||||||||  ||| |  || ||||| ||||  ||| ||||||||  |     
T  21097 tgggagacaagcggttgtcaacatggaaggagtgttgatcgtgggattagtttctttccac-ttatttcctatgtataaatagtagtcttccatagggac 20999  T
Q  1289 aacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacca 1388  Q
    || |||||||||||||| |||| | |||||||||||| |  ||||||     |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  20998 aatgggtcgcaaatcacgtata-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaacca 20900  T
Q  1389 cctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaag 1488  Q
    |||||||||| ||||||||| |||||  |||||||||| ||||||||| |||||||||||||| || |   | ||||||||||| |||||||||| ||||    
T  20899 cctttattttaaatgcattgcattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacc-tttttctgtcaaaag 20801  T
Q  1489 acgccaca 1496  Q
    ||||||||    
T  20800 acgccaca 20793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1052 - 1163
Target Start/End: Complemental strand, 21337 - 21225
Alignment:
Q  1052 tattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagtttcaaagagatg 1150  Q
    ||||||||||| ||||||||||| || |||||||| ||||| ||||| | ||||| |||| ||||   |||||||||| | || ||||||| | ||||||    
T  21337 tattttcaccatcctcatttaatatgatcaacatttgttgacttttatttttgcaagaatcgaagcatttttcttcaaccgaaagagtttcgacgagatg 21238  T
Q  1151 ttggacttagcat 1163  Q
    ||||||| |||||    
T  21237 ttggactaagcat 21225  T

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Target: scaffold0002 (Bit Score: 72; Significance: 5e-32; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 5e-32
Query Start/End: Original strand, 1190 - 1446
Target Start/End: Original strand, 374041 - 374294
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattc-gtttctttccaaattagtat-ctttgtattaataagagttttccatagaa 1287  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| ||||  | || ||||  | ||| | | || ||||| ||||  ||||||||||||      
T  374041 tgggagacaagcggttgtctacatggaagaagtgctgatcgtgagattttgcttttttc--agttattttgctatgtataaatagtagttttccataggg 374138  T
Q  1288 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 1387  Q
    |||  ||||||||||||| |||| ||| | ||| |||| ||||||||| || ||||||||||||||| ||| | ||||||||||||| ||||||||||||    
T  374139 aaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaaaatgtatgtaaagtatttgtcgaacc 374236  T
Q  1388 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
    |||||||||||||||||| || | |||| |||||||||| |||| |||||||| |||||    
T  374237 acctttatttttaatgcaatgcaatttatctttccttta-gtttttgcaattttaactt 374294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 945 - 1098
Target Start/End: Original strand, 373696 - 373847
Alignment:
Q  945 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 1044  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |  |  |  ||  |||||||||||| ||| ||||||||||||||||    
T  373696 tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt 373793  T
Q  1045 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 1098  Q
    ||| ||||  ||| |||| ||||||||||||||||||||||| ||||| |||||    
T  373794 tagttggttattttaccaacctcatttaatgtggtcaacattagttgactttta 373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 2e-28; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 1274 - 1446
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| || | ||||||| ||||||||||||||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  1373 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 1446  Q
    ||||||||||||||||||||||||||||| ||| || | |||| | || ||||| ||||||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 1331 - 1446
Target Start/End: Complemental strand, 4661 - 4546
Alignment:
Q  1331 agtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtt 1430  Q
    |||||||| ||||||||||||||| ||| |||||| || |||| ||||||| ||||||||||||||||||| ||| || | ||||   || ||||| |||    
T  4661 agtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaaccacctttatttttaaagcaatgcaatttattatttctttaagtt 4562  T
Q  1431 tctgcaatttaaactt 1446  Q
    |||||| ||| |||||    
T  4561 tctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 65; Significance: 7e-28; HSPs: 2)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 65; E-Value: 7e-28
Query Start/End: Original strand, 1042 - 1186
Target Start/End: Original strand, 5725 - 5869
Alignment:
Q  1042 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 1141  Q
    |||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||  |||||||||||| |||| |||||| ||| | |||||||||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacattaggtgactttttttcttgcaggaatcgaagccttttcctcagttaaaggagtttc 5824  T
Q  1142 aaagagatgttggacttagcattgaaaagtctcgaagccttaaag 1186  Q
    || |||||||| ||||||||||  ||||| || |||||| |||||    
T  5825 aacgagatgttagacttagcatgaaaaagccttgaagccctaaag 5869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795; HSP #2
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 1190 - 1250
Target Start/End: Original strand, 5971 - 6031
Alignment:
Q  1190 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttccaa 1250  Q
    ||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||||||    
T  5971 tgggagacaagcggttgcctacatggaacgagtgctgatcgtgggattagtttctttccaa 6031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 62; Significance: 4e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 1274 - 1374
Target Start/End: Complemental strand, 13092 - 12991
Alignment:
Q  1274 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 1372  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  13092 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 12993  T
Q  1373 ag 1374  Q
    ||    
T  12992 ag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 54; Significance: 3e-21; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1049 - 1161
Target Start/End: Complemental strand, 5388 - 5276
Alignment:
Q  1049 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtcttttcttcaatcaaaggagtttcaaagag 1147  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||| ||||||||  |||||||||||||||   |||||| ||||| |||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttgactttta-tcttcgcaggaatcaaagtcttttcttcaacttaaggagcttcaacgag 5290  T
Q  1148 atgttggacttagc 1161  Q
    ||||||||||||||    
T  5289 atgttggacttagc 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 48; Significance: 1e-17; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1262 - 1415
Target Start/End: Complemental strand, 20725 - 20572
Alignment:
Q  1262 tgtattaataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaa 1360  Q
    ||||| ||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| || ||||||||| ||||||||||||||| ||| |    
T  20725 tgtataaataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttataca 20627  T
Q  1361 gaatgtatgt-aaaggatttgtcgaaccacctttatttttaatgcattgtatttta 1415  Q
     ||||||||| |||  ||||||| ||||||||||| |||||||||| |||| ||||    
T  20626 taatgtatgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 1274 - 1398
Target Start/End: Original strand, 871 - 996
Alignment:
Q  1274 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-a 1371  Q
    ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| |||||| | |||||| ||| | ||||||||| |    
T  871 agttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttatacataatgtatgtaa 969  T
Q  1372 aaggatttgtcgaaccacctttatttt 1398  Q
    || ||||||| |||| |||||||||||    
T  970 aatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.0000005; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1343 - 1446
Target Start/End: Original strand, 26930 - 27031
Alignment:
Q  1343 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 1441  Q
    |||||||||||||||| | |||||||||||    |||||||||||||||||||  ||||||||| || | |||| |||| ||||| ||||||||  ||||    
T  26930 agagaaaagagtcatacataatgtatgtaatctaatttgtcgaaccaccttta--tttaatgcaatgcaatttatcttttcttta-gtttctgcgtttta 27026  T
Q  1442 aactt 1446  Q
    |||||    
T  27027 aactt 27031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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