View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16997_low_2 (Length: 892)
Name: NF16997_low_2
Description: NF16997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16997_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 737; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 737; E-Value: 0
Query Start/End: Original strand, 1 - 877
Target Start/End: Complemental strand, 11859521 - 11858645
Alignment:
| Q |
1 |
tgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| ||| ||||||||| |||||| |||||| | ||||||||||||| |||||||||||||||||| |
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|
| T |
11859521 |
tgaaacaatgaccaagattcctcttgattaagcccctgcaacttcaaaacatgtctagcagcaattttgttggcaacatggctgcttcgtgttgttgtaa |
11859422 |
T |
|
| Q |
101 |
caagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattcttaatctcaattcgcaaatcatctat |
200 |
Q |
| |
|
||||||| |||||||||||||||| || ||||||| | |||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
11859421 |
caagtatgacggtatcagtccttccacctgcagcctgcgctaatttcttctgcaacttctcgagatcaccattctcaatctcaattcgcaaatcatctat |
11859322 |
T |
|
| Q |
201 |
aacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatgagggccattgatccaaattgct |
300 |
Q |
| |
|
||||||||||| |||||||| |||| || || |||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
11859321 |
aacaagtaagacgcgtttcttatgaacataccgatcagtaacgctttttactatggattcaacatcaaattggtgatgaagaccattgatccaaattgct |
11859222 |
T |
|
| Q |
301 |
tggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11859221 |
tggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaag |
11859122 |
T |
|
| Q |
401 |
gaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaacagctacatgctcagtacttttctcaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11859121 |
gaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaacagctacatgctcagtacttttctcaaa |
11859022 |
T |
|
| Q |
501 |
atctgtgtatgccaactttcttttctcattagtattactaataactgttttttcttccttcagcagcagttcgagttcctcggtggctttgttgacttga |
600 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
11859021 |
atctttgtatgccaactttcttttctcattagtattactaataactgttttttcttccttcagcagcagttcgagttcctcagtggctttgttgacttgg |
11858922 |
T |
|
| Q |
601 |
acaatggctttcttgaattggtaacgatttattatgtttaagcccgttttgataagcgattttgatgagtcggtgatactctccttgtaacgaagatcct |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11858921 |
acaatggctttcttgaattggtaacgatttataatgtttaagcctgttttgataagcgattttgatgagtcggtgatactctccttgtaacgaagatcct |
11858822 |
T |
|
| Q |
701 |
ccatcaaatcgttcaaatcgatgactacatctttaaccttttgaagccactcggagtagtggctgtgtttatggactttgtcattgatttgtgtgagaat |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11858821 |
ccatcaaatcgttcaaatcgatgactacatctttaaccttttgaagccactcggagtagtggctgtgtttatggactttgtcattgatttgtgtgagaat |
11858722 |
T |
|
| Q |
801 |
gttttcaagctgggtgatgtcaattcctgataaacgacttggtaggggttttagggagcttgtagattgtcggatgt |
877 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
11858721 |
gttttcaagctgggtgatgtcaagtcctgataaacgacttggtaggggttttagggagcttgtagattgtaggatgt |
11858645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 3 - 547
Target Start/End: Complemental strand, 12038302 - 12037773
Alignment:
| Q |
3 |
aaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaaca |
102 |
Q |
| |
|
|||||| |||||||| ||||| ||||||||| ||| ||| ||||||||| ||| || |||||||| || ||| |||||||| || ||||| || || |
|
|
| T |
12038302 |
aaacaaggaccaagaatcctcttgattaagcccctgcaacttcaaaacatgtccagcagcaatgttgtcggcgacatggttactacgtgtagt---aatg |
12038206 |
T |
|
| Q |
103 |
agtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatcattct---taatctcaattcgcaaatcatcta |
199 |
Q |
| |
|
||||| || ||||||| | || ||| |||| || ||||||||||||||||||||| |||| |||| || ||||||||| || ||||||||||| |
|
|
| T |
12038205 |
agtatggccgtatcagcacggccaccaacagcttcagttaatttcttctgcaacttctcaagataatcaggctcattaatctcaaatctcaaatcatcta |
12038106 |
T |
|
| Q |
200 |
taacaagtaagatgcgtttctcatgatcagactgatcagtaacacattttactatggattcaacatcaaattggtgatgagggccattgatccaaattgc |
299 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| | | ||||| |||| |||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
12038105 |
taacaagtaagaggcgtttctcatgatgagact---cggcaacactttttgctatagattcaacatcaaa--ggtt----------ttgatccaaattgg |
12038021 |
T |
|
| Q |
300 |
ttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaa |
399 |
Q |
| |
|
||| || ||| || || || |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| | |
|
|
| T |
12038020 |
ttgtaacccaaaattcatttcgacttgctcatcctcacaaacgagatgagcaagttttgttttgccaattccaggaacaccaacaataacaataacaaca |
12037921 |
T |
|
| Q |
400 |
ggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaacagctacatgctcagtacttttctcaa |
499 |
Q |
| |
|
|||||||||| |||| || |||| |||| |||||||||||||| ||| | |||||| ||||||| |||||||||||||||| ||| ||||||||| |
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|
| T |
12037920 |
ggaacagcagcatcagtgttcttcaggttcaccagtttatctataagctcttccttctcattttctcttccaacagctacatgcttggtatttttctcaa |
12037821 |
T |
|
| Q |
500 |
aatctgtgtatgccaactttcttttctcattagtattactaataactg |
547 |
Q |
| |
|
| ||| |||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
12037820 |
agtcttcacatgcagactttcttttctcagtagtattactaataactg |
12037773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 674 - 856
Target Start/End: Complemental strand, 12037658 - 12037479
Alignment:
| Q |
674 |
tgatactctccttgtaacgaagatcctccatcaaatcgttcaaatcgatgactacatctttaaccttttgaagccactcggagtagtggctgtgtttatg |
773 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | ||| || |
|
|
| T |
12037658 |
tgatactctctttgtaacgaagatcctcagtcaaatcgttcaaatcgattactacatctttaaccttttgaagccactcgg---agtggctctttttttg |
12037562 |
T |
|
| Q |
774 |
gactttgtcattgatttgtgtgagaatgttttcaagctgggtgatgtcaattcctgataaacgacttggtaggggttttaggg |
856 |
Q |
| |
|
||||||||||||||||||| | ||| |||||||||||||| || |||||||||||||| ||| ||| || ||||||||||| |
|
|
| T |
12037561 |
gactttgtcattgatttgtttaagattgttttcaagctggtcgaggtcaattcctgatagtcgaattgctaagggttttaggg |
12037479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 317 - 480
Target Start/End: Complemental strand, 11827037 - 11826868
Alignment:
| Q |
317 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaatagcaattacaaaaggaacagca------gt |
410 |
Q |
| |
|
||||||||||||| || |||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| | || |||||||||| || |
|
|
| T |
11827037 |
ctttgacttgctcgtcctcacaaacgagatgagcaagttttgttttcccaattccagtaacaccaacaatagcaataaaaacaggaacagcagcatccgt |
11826938 |
T |
|
| Q |
411 |
atcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaacagctaca |
480 |
Q |
| |
|
||| | | |||| |||||||||| ||||||||| || |||||||| ||||||| |||||||||||| |
|
|
| T |
11826937 |
atcggcgctcttcaggttcagcagttgatctataatttctttcttctcattttctcttccaacagctaca |
11826868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 11827380 - 11827171
Alignment:
| Q |
1 |
tgaaacaatgaccaagattcctcctgattaagctcctccaatttcaaaacaagtctagtagcaatgtcgttggcaacatggttgcttcgtgttgttgtaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| ||| ||||||||| | ||| | |||| | |||||| ||||||||||| | ||| || || |
|
|
| T |
11827380 |
tgaaacaatgaccaagattccttttgattaagcccctgcaacttcaaaacatatgtagcaccaatattgttggcgacatggttgctacatgtggt---aa |
11827284 |
T |
|
| Q |
101 |
caagtatcgcggtatcagtccttccgccagcagcctccattaatttcttctgcaacttcttgagatcatca---ttcttaatctcaattcgcaaatcatc |
197 |
Q |
| |
|
|||||| |||||| || | || |||||| ||||||| ||||||||||| ||||||| ||| |||||| || |||||| |||||| ||||||||| |
|
|
| T |
11827283 |
tgagtatcacggtattggtacggccaccagcaacctccatcaatttcttctgtaacttctcgaggtcatcatgcttattaatcgcaattctcaaatcatc |
11827184 |
T |
|
| Q |
198 |
tataacaagtaag |
210 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
11827183 |
tataataagtaag |
11827171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 288 - 473
Target Start/End: Original strand, 11903281 - 11903466
Alignment:
| Q |
288 |
gatccaaattgcttggaaaccagaactccctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaata |
387 |
Q |
| |
|
||||||||||| || ||||||| || |||||||||| |||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11903281 |
gatccaaattggttcgaaaccaaaatgagctttgacttgttcatcttcgcaaacaagacttgcaagttttgttttcccaattccaggaacaccaacaatg |
11903380 |
T |
|
| Q |
388 |
gcaattacaa-aaggaacagcagtatcaaccttgttcatcttcagcagtttatctataatctccttcttctctctttctctgccaac |
473 |
Q |
| |
|
|||| ||| || ||| | || | || ||||||| |||||| |||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
11903381 |
acaataacaggaacgaa-atcatcagcagggttgttcaacttcagtagttgatctataatctccttcttttcattttctctgccaac |
11903466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 677 - 749
Target Start/End: Complemental strand, 11826671 - 11826599
Alignment:
| Q |
677 |
tactctccttgtaacgaagatcctccatcaaatcgttcaaatcgatgactacatctttaaccttttgaagcca |
749 |
Q |
| |
|
|||||||||| | || ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
11826671 |
tactctccttttgtcggagatcctccatcaaatcattcaaatcgatgagtacttctttaaccttttgaagcca |
11826599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 11730895 - 11730826
Alignment:
| Q |
317 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
386 |
Q |
| |
|
|||||||||||||||| || ||||| || || ||||||||||| || || ||||| |||||||||||||| |
|
|
| T |
11730895 |
ctttgacttgctcatcctcgcaaacaagccgtgcaagttttgtcttccctattcccggaacaccaacaat |
11730826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 767 - 856
Target Start/End: Original strand, 11903793 - 11903885
Alignment:
| Q |
767 |
gtttatggactttgtcattgatttgtgtgagaatgttttcaagctgggtgatg---tcaattcctgataaacgacttggtaggggttttaggg |
856 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||||| | |||||||| | ||||| || ||||||||||||||| | |||| |||||||||| |
|
|
| T |
11903793 |
gtttctggactttgtcattgatttctttgagaatatcttcaagcttgttgatgtgatctattcctgataaacgagtaggtataggttttaggg |
11903885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 11730451 - 11730382
Alignment:
| Q |
317 |
ctttgacttgctcatcttcacaaacgagacgagcaagttttgttttgccaattccaggaacaccaacaat |
386 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| ||||||||||| || || ||||| | |||||||||||| |
|
|
| T |
11730451 |
ctttgacttgctcatccttgcaaacaagacgtgcaagttttgtctttcctattcctgaaacaccaacaat |
11730382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 772 - 820
Target Start/End: Original strand, 4409916 - 4409964
Alignment:
| Q |
772 |
tggactttgtcattgatttgtgtgagaatgttttcaagctgggtgatgt |
820 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |||| |||||| |
|
|
| T |
4409916 |
tggactttgtcattgatttgtttgagattgttttcaaactggttgatgt |
4409964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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