View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16997_low_3 (Length: 375)
Name: NF16997_low_3
Description: NF16997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16997_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 42305471 - 42305837
Alignment:
| Q |
1 |
tgtcaatgtttctatagtcctagctatttgattttcttctaagctaacaagagtcttccaaaaccaaattcgcgctcaaaattaaagcaacttgggtggt |
100 |
Q |
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| T |
42305471 |
tgtcaatgtttctatagtcctagctatttgattttcttctaagctaacaagagtcttccaaaatcaaattcgcgctcaaaattaaagcaacttgggtggt |
42305570 |
T |
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| Q |
101 |
aaccattccaaaatacttagggccacattgctctaaaagtcaataagaataagtaataattcaaagatagccaaccttatagtatattttaatatgaatg |
200 |
Q |
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| T |
42305571 |
aaccattccaaaatacttagggccacattgctctaaaagtcaataagaataagtaataattcaaagatagccaaccttatagtatattttaatatgaatg |
42305670 |
T |
|
| Q |
201 |
tatgcatgtttcctagaaggtgagtaagctaactaatcaagatactttgttggagttaaatatggtaaagaatccaactataaaatggggacttgcccca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42305671 |
tatgcatgtttcctagaaggtgagtaagctaactaatcaagatactttgttggagttaaatatggtaaagaatccaactataaaatggggacttgcccca |
42305770 |
T |
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| Q |
301 |
gcattctttcacaaaccaaaaccaacttctaagnnnnnnntgaggtccctaatggcctatgcttctc |
367 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
42305771 |
gcattctttcacaaaccaaaaccaacttctaagaaaaaaatgaggtccctaatggcctctgcttctc |
42305837 |
T |
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