View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16997_low_4 (Length: 261)
Name: NF16997_low_4
Description: NF16997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16997_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 51418642 - 51418409
Alignment:
| Q |
18 |
ctcccttcatttctggttccataatacaccctcatttgccggcgactgcgttctgcaaccggagataatagcttcctcctactactgtttacaccacgag |
117 |
Q |
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| T |
51418642 |
ctcccttcatttctggttccataatacaccctcatttgccggcgactgcgttctgccaccggagataatagcttcctcctactactgtttgcaccacgag |
51418543 |
T |
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| Q |
118 |
agagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtg |
217 |
Q |
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| T |
51418542 |
agagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtg |
51418443 |
T |
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| Q |
218 |
cttcaccatcacgttgttcagtgctttccctatg |
251 |
Q |
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| T |
51418442 |
cttcaccatcacgttgttcagtgctttccctatg |
51418409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 76 - 251
Target Start/End: Complemental strand, 51413534 - 51413356
Alignment:
| Q |
76 |
ccggagataatagcttcctcctactactgtttacaccac---gagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaa |
172 |
Q |
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| T |
51413534 |
ccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatgaa |
51413435 |
T |
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| Q |
173 |
atacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
251 |
Q |
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| T |
51413434 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgctgttcaatgctttccctatg |
51413356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 76 - 181
Target Start/End: Complemental strand, 51416581 - 51416472
Alignment:
| Q |
76 |
ccggagataatagcttcctcctactactgtttacacca----cgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatga |
171 |
Q |
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|||||||||||||||| |||||||| ||| || ||||| |||| |||| |||||||| |||||||||||||||||||||| ||||||||||||| || |
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| T |
51416581 |
ccggagataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacga |
51416482 |
T |
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| Q |
172 |
aatacatatc |
181 |
Q |
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| T |
51416481 |
aatacatatc |
51416472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 29323760 - 29323690
Alignment:
| Q |
150 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggcacgtgagtgcttcatggtgctt |
220 |
Q |
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| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggcacatgagtgcttcgtggtgctt |
29323690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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