View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16998_high_2 (Length: 379)
Name: NF16998_high_2
Description: NF16998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16998_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 117 - 364
Target Start/End: Original strand, 479701 - 479948
Alignment:
| Q |
117 |
gagaaactctcgctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctagtaataataatat |
216 |
Q |
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| T |
479701 |
gagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctagtaataataatat |
479800 |
T |
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| Q |
217 |
aaacgcatatttacactcatgtacgtgagattgatttgtgttatcatggctctatatatgttgcagcattacattgaatcaaaatttattttttgagggt |
316 |
Q |
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| T |
479801 |
aaacgcatatttacactcatgtacctgagattgatttgtgttatcatggctctatatatgttgcagcattacattgaatcaaaatttattttttgagggt |
479900 |
T |
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| Q |
317 |
atatttctagcttctgcttcagttgcaagtgccatgtccaaccttgtt |
364 |
Q |
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| T |
479901 |
atatttctagcttctgcttcagttgcaagtgccatgtccaaccttgtt |
479948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 454931 - 455121
Alignment:
| Q |
1 |
gctcccattgcttatttatctgggaatattttactatcaccaccttatctatcctttcctcttatctaaagtctattaagtaatttattgtttctattcc |
100 |
Q |
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| T |
454931 |
gctcccattgcttatttatctgggtatattttactatcaccaccttatctatcctttcctcttatctaaagtttattaagtaatttattgtttctattcc |
455030 |
T |
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| Q |
101 |
-ttttttcacaggagaagagaaactctcgctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc |
195 |
Q |
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| T |
455031 |
tttttttcacag-----gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc |
455121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 467492 - 467577
Alignment:
| Q |
272 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaa |
357 |
Q |
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| T |
467492 |
atatattgcagcattacattgaatcaaaatttatattttgagggtctatatctttcttcttcttcagttgcaagtgccatttccaa |
467577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 466750 - 466835
Alignment:
| Q |
117 |
gagaaactctcgctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctct |
202 |
Q |
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| T |
466750 |
gagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttccattctct |
466835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 474520 - 474605
Alignment:
| Q |
272 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatgtccaa |
357 |
Q |
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| T |
474520 |
atatgatgcagcgttacattgactcaaaatctatattttgagggtctatatctatcttcttcttcaattgcaagtgccatgaccaa |
474605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 352
Target Start/End: Original strand, 446508 - 446566
Alignment:
| Q |
294 |
atcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatg |
352 |
Q |
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| T |
446508 |
atcaaaatttatattttgagggtctatatctatcttctgcttcaattgcaagtgccatg |
446566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 474235 - 474276
Alignment:
| Q |
117 |
gagaaactctcgctcttattccttaaatttaaggagtttttc |
158 |
Q |
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| T |
474235 |
gagaaactctgcctcttattccttaaatttaaggagtttttc |
474276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 446016 - 446108
Alignment:
| Q |
117 |
gagaaactctcgctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattctctagtaata |
209 |
Q |
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|||||||||| ||| || |||||||| |||||||||||||| | | ||||| | || ||||||||| |||| |||| |||| |||||||||| |
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| T |
446016 |
gagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttctagtaata |
446108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 352
Target Start/End: Original strand, 455212 - 455292
Alignment:
| Q |
272 |
atatgttgcagcattacattgaatcaaaatttattttttgagggtatatttctagcttctgcttcagttgcaagtgccatg |
352 |
Q |
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|||| |||||||||||| || |||||||||||| |||||||||| ||| |||| | ||| ||||| ||||| ||||||| |
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| T |
455212 |
atattttgcagcattactttatatcaaaatttatattttgagggtctatatctatcatcttcttcaactgcaactgccatg |
455292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 27493602 - 27493536
Alignment:
| Q |
134 |
attccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttccattct |
200 |
Q |
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| T |
27493602 |
attccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttctattct |
27493536 |
T |
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