View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16998_high_3 (Length: 369)

Name: NF16998_high_3
Description: NF16998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16998_high_3
NF16998_high_3
[»] chr5 (2 HSPs)
chr5 (190-341)||(4408403-4408551)
chr5 (33-137)||(4408266-4408371)
[»] chr8 (1 HSPs)
chr8 (196-257)||(7558865-7558927)
[»] chr7 (2 HSPs)
chr7 (196-236)||(31174047-31174087)
chr7 (101-141)||(45809267-45809307)
[»] chr4 (1 HSPs)
chr4 (196-236)||(21734371-21734411)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 190 - 341
Target Start/End: Original strand, 4408403 - 4408551
Alignment:
Q  190 acagtgactattactaatacaaaatgaacttcataaaatacacttaagtaacaagaatgaattataccnnnnnnnnnncaagaataatagaggatgtata 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||          ||||||||||||||||||||||    
T  4408403 acagtgactattactaatacaaaatgaacttcataaaatacacttaagcaacaagaatgaattataccaaaaaaa---caagaataatagaggatgtata 4408499  T
Q  290 aaacttgaggtagtcaaagatatattactagagatagctatgtataaaaata 341  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  4408500 aaacttgaggtagtgaaagatatattactagagatagctatatataaaaata 4408551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 4408266 - 4408371
Alignment:
Q  33 ttcgagtaagtggcaatatattgttgttcatagcatgttttccggtcataatattttttaattgacaac-ggcgaagctaacaatattttcatgagatag 131  Q
    |||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||||| |||| | |||| ||||||||||||||||||| |||    
T  4408266 ttcgagtaagtggcaatatattgttgttcatagcatgttttttgtccataatattttttaattggcaacagccgaaactaacaatattttcatgaggtag 4408365  T
Q  132 tcatat 137  Q
    ||||||    
T  4408366 tcatat 4408371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 7558865 - 7558927
Alignment:
Q  196 actattactaatacaaaatgaacttcataaaatacactt-aagtaacaagaatgaattatacc 257  Q
    |||||||||||||||||||| | |||||||||||||||| ||| |||||||||||||||||||    
T  7558865 actattactaatacaaaatgtatttcataaaatacacttaaagcaacaagaatgaattatacc 7558927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 31174047 - 31174087
Alignment:
Q  196 actattactaatacaaaatgaacttcataaaatacacttaa 236  Q
    ||||||||| ||| |||||| ||||||||||||||||||||    
T  31174047 actattacttatataaaatgtacttcataaaatacacttaa 31174087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 45809267 - 45809307
Alignment:
Q  101 cggcgaagctaacaatattttcatgagatagtcatatataa 141  Q
    ||||||||||||||||||||||||||| | |||| ||||||    
T  45809267 cggcgaagctaacaatattttcatgaggtggtcacatataa 45809307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 21734411 - 21734371
Alignment:
Q  196 actattactaatacaaaatgaacttcataaaatacacttaa 236  Q
    ||||||||| ||| |||||| ||||||||||||||||||||    
T  21734411 actattacttatataaaatgtacttcataaaatacacttaa 21734371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University