View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16998_low_1 (Length: 534)
Name: NF16998_low_1
Description: NF16998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16998_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 4 - 510
Target Start/End: Complemental strand, 28575235 - 28574729
Alignment:
| Q |
4 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575235 |
atactgacggagcgtgtaaggatggtagtatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
28575136 |
T |
|
| Q |
104 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575135 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccgatgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
28575036 |
T |
|
| Q |
204 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28575035 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaag |
28574936 |
T |
|
| Q |
304 |
tgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28574935 |
tgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtg |
28574836 |
T |
|
| Q |
404 |
tccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28574835 |
tccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccc |
28574736 |
T |
|
| Q |
504 |
tttcatc |
510 |
Q |
| |
|
||||||| |
|
|
| T |
28574735 |
tttcatc |
28574729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 320 - 509
Target Start/End: Original strand, 32971687 - 32971876
Alignment:
| Q |
320 |
gtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaattaac |
419 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32971687 |
gtatcgtgaagcaaataggtgcgctgatacgttagctaatattggatgtatcatgggaaatgagatgatgttttatgagtcgtgtccgactcaaattaac |
32971786 |
T |
|
| Q |
420 |
catttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccctttcat |
509 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
32971787 |
tatttgttaactgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggtcctcccattcat |
32971876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 366 - 509
Target Start/End: Original strand, 5472114 - 5472258
Alignment:
| Q |
366 |
tgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgg-gggttacttttccgcgcttg |
464 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| || |||||||||||||||||||||| || ||||||||||| | ||||||||||||||||| |
|
|
| T |
5472114 |
tgtatcatggggaatgagatgatgtattatgagtcgtgcccaactcaaattaaccatttgttagttgttgatcaagcggagatttacttttccgcgcttg |
5472213 |
T |
|
| Q |
465 |
attaagatgtaatttctttttccgggcttcggccctccctttcat |
509 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
5472214 |
attaagatgtaatttcttttttcggatttcggccctccctttcat |
5472258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 139 - 270
Target Start/End: Complemental strand, 38658365 - 38658234
Alignment:
| Q |
139 |
ttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaagga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| | ||||| |||||| | ||||||| | |||| || ||||| || |||| || |||||||| |
|
|
| T |
38658365 |
ttttggaaggtctccggtgtgcgaaacgaatggggtttatagcagttgaattacaagtggattttttggttgtggtgaacataattatgaaggggaagga |
38658266 |
T |
|
| Q |
239 |
aagcaatgcgaggggtaggagtcttgttcaaa |
270 |
Q |
| |
|
| |||| ||| || |||||||||||||||| |
|
|
| T |
38658265 |
tatcaattcgattggaaggagtcttgttcaaa |
38658234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 388 - 486
Target Start/End: Complemental strand, 38658145 - 38658047
Alignment:
| Q |
388 |
tgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttc |
486 |
Q |
| |
|
||||||| |||| |||||||||||||||| ||||||||| |||||||||| | || || |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
38658145 |
tgttttacgagttttgtccgactcaaattagtcatttgttaattgctgatcaaacatggatttcttttccgcgtttgattaagatgtaatttctctttc |
38658047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 4 - 510
Target Start/End: Original strand, 16237209 - 16237715
Alignment:
| Q |
4 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16237209 |
atactgacggagcgtgtaaggatggtagtatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
16237308 |
T |
|
| Q |
104 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16237309 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
16237408 |
T |
|
| Q |
204 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaag |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16237409 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaag |
16237508 |
T |
|
| Q |
304 |
tgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16237509 |
tgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgggatgatgttttatgagtcgtg |
16237608 |
T |
|
| Q |
404 |
tccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16237609 |
tccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccc |
16237708 |
T |
|
| Q |
504 |
tttcatc |
510 |
Q |
| |
|
||||||| |
|
|
| T |
16237709 |
tttcatc |
16237715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 239 - 509
Target Start/End: Original strand, 32407607 - 32407874
Alignment:
| Q |
239 |
aagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaatagg |
338 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
32407607 |
aagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttc---aaatggaatgggaagtgaaggttaaacactcgtattgtgaaacaaataag |
32407703 |
T |
|
| Q |
339 |
tgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatc |
438 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32407704 |
tgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatgttttataagttgtgtccgactcaaattaaccatttgttagctgctgatc |
32407803 |
T |
|
| Q |
439 |
aagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccctttcat |
509 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32407804 |
aagcgggggttacttttccgcgtttgattaagatgtaatttctttttccgggcttaggccctccctttcat |
32407874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 11168963 - 11169024
Alignment:
| Q |
379 |
atgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaa |
440 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
11168963 |
atgagatgatgttttatgaatcttgtccgacacaaattagtcatttgtttgctgctgatcaa |
11169024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 4 - 509
Target Start/End: Complemental strand, 20633427 - 20632922
Alignment:
| Q |
4 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
103 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633427 |
atactgacggagcttgtaaggatggtagtatcgcggggtgtggaggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagg |
20633328 |
T |
|
| Q |
104 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633327 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
20633228 |
T |
|
| Q |
204 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaag |
303 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20633227 |
ttggtggttgtgaatattattacgagtgagagggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatggaaag |
20633128 |
T |
|
| Q |
304 |
tgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
20633127 |
tgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatgttttatgagtcgtg |
20633028 |
T |
|
| Q |
404 |
tccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccc |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633027 |
accgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccc |
20632928 |
T |
|
| Q |
504 |
tttcat |
509 |
Q |
| |
|
|||||| |
|
|
| T |
20632927 |
tttcat |
20632922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 4 - 510
Target Start/End: Complemental strand, 48823458 - 48822952
Alignment:
| Q |
4 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagg |
103 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48823458 |
atactgacggagcttgtaaggatggtagtatcgcggggtgtggaggacttatcagaggttcggaaggcgagtggttagcggggttctccaaatttttagg |
48823359 |
T |
|
| Q |
104 |
gaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattct |
203 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
48823358 |
gaagagtgatgcttttattgcagagctatggggagttttggaaggtctccggtgtgcaaaacgtacagggttcactgcagtagaattaaatatggattct |
48823259 |
T |
|
| Q |
204 |
ctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaag |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48823258 |
ttggtggttgtgaatattattacgagtgggggggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaag |
48823159 |
T |
|
| Q |
304 |
tgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48823158 |
tgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatgttttatgagtcgtg |
48823059 |
T |
|
| Q |
404 |
tccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccc |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48823058 |
tccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcacttgattaagatgtaatttctttttccgggcttcggccctccc |
48822959 |
T |
|
| Q |
504 |
tttcatc |
510 |
Q |
| |
|
||||||| |
|
|
| T |
48822958 |
tttcatc |
48822952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 269 - 509
Target Start/End: Complemental strand, 11692118 - 11691880
Alignment:
| Q |
269 |
aaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgt |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11692118 |
aaaaattagaaaacttcttcaaatggaatgggaattgaaggttaaacac--gtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgt |
11692021 |
T |
|
| Q |
369 |
atcatggagaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgatta |
468 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11692020 |
atcatggggaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgatta |
11691921 |
T |
|
| Q |
469 |
agatgtaatttctttttccgggcttcggccctccctttcat |
509 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11691920 |
agacgtaatttctttttccgggcttcggctctccctttcat |
11691880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 307 - 463
Target Start/End: Complemental strand, 10449050 - 10448894
Alignment:
| Q |
307 |
aggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtcc |
406 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10449050 |
aggttaaaaactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatgttttatgagtcgtgtct |
10448951 |
T |
|
| Q |
407 |
gactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgctt |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10448950 |
gactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgggctt |
10448894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 263 - 363
Target Start/End: Complemental strand, 17525922 - 17525822
Alignment:
| Q |
263 |
tgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatatt |
362 |
Q |
| |
|
|||| |||||||||| |||||||| ||||| | |||||||||||||| |||| || ||||||||||| ||||||||| | |||| |||||||||||| |
|
|
| T |
17525922 |
tgttaaaaaaattaggcaacttctttaaatgaagtgggaagtgaaggtccaacattcttatcgtgaagccaataggtgcacatatgcattagctaatatt |
17525823 |
T |
|
| Q |
363 |
g |
363 |
Q |
| |
|
| |
|
|
| T |
17525822 |
g |
17525822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 510
Target Start/End: Complemental strand, 10448905 - 10448877
Alignment:
| Q |
482 |
ttttccgggcttcggccctccctttcatc |
510 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10448905 |
ttttccgggcttcggccctccctttcatc |
10448877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 58 - 510
Target Start/End: Complemental strand, 38833471 - 38833022
Alignment:
| Q |
58 |
gaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtg |
157 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38833471 |
gaggttcggaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgcttttattgcagagctatggggagttttggaaggtctccggtg |
38833372 |
T |
|
| Q |
158 |
tgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtgggaaggaaagcaatgcgaggggtagg |
257 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38833371 |
tgcaaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgagtgggaaggaaagcaatgcgagtggtagg |
38833272 |
T |
|
| Q |
258 |
agtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagcta |
357 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38833271 |
agttttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacattcgtatcgtgaagcaactaggtgcgctgatgcgttagcta |
38833172 |
T |
|
| Q |
358 |
atattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttcc |
457 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38833171 |
atattggatgtatcatggggaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttcc |
38833072 |
T |
|
| Q |
458 |
gcgcttgattaagatgtaatttctttttccgggcttcggccctccctttcatc |
510 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
38833071 |
gcgcttgattaagatgtaatttc---ttccgagcttcggccctccctttcatc |
38833022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 130 - 509
Target Start/End: Original strand, 18185400 - 18185773
Alignment:
| Q |
130 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
18185400 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacaag |
18185499 |
T |
|
| Q |
230 |
tgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa |
329 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
18185500 |
tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaaattctttagatggaataggaagtgaaggttaaacacccgtatcgtgaa |
18185599 |
T |
|
| Q |
330 |
gcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttag |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
18185600 |
gcaaataggtgcgctgatgcgttagctaatattggatgtatcatggggaatgagatgatattttatgagt------cgactcaaattaaccatttgttag |
18185693 |
T |
|
| Q |
430 |
ctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccctttcat |
509 |
Q |
| |
|
||| |||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18185694 |
ctgttgatcagacgggggttatttttccgtgctttattaagatgtaatttctttttccgggcttcggccctccctttcat |
18185773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 297 - 510
Target Start/End: Complemental strand, 29752422 - 29752210
Alignment:
| Q |
297 |
tgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatg |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
29752422 |
tgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattgg-tgtatcatggggaatgagatgatgttttatg |
29752324 |
T |
|
| Q |
397 |
agtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcgg |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29752323 |
agtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatataatttctttttccgggcttcgg |
29752224 |
T |
|
| Q |
497 |
ccctccctttcatc |
510 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29752223 |
ccctccctttcatc |
29752210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 38835921 - 38835871
Alignment:
| Q |
4 |
atactgacggagcgtgtaaggatggtagcatcgcggggtgtggaggactta |
54 |
Q |
| |
|
||||| ||| ||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38835921 |
atactaacgaagcttgtaaggatggtagtatcgcggggtgtggaggactta |
38835871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 130 - 510
Target Start/End: Original strand, 39180666 - 39181046
Alignment:
| Q |
130 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgag |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39180666 |
tatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctttggtggttgtgaatattattacgag |
39180765 |
T |
|
| Q |
230 |
tgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa |
329 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39180766 |
tgggaaggaaagcaatgcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaa |
39180865 |
T |
|
| Q |
330 |
gcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttag |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39180866 |
gcaaataggtgcgctgatgcgttagctaatattagatgtatcatgaggaatgagatgatgttttatgagtcatgtccgactcaaattaaccatttgttag |
39180965 |
T |
|
| Q |
430 |
ctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccctttcatc |
510 |
Q |
| |
|
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39180966 |
ctgctgatcaagcgagagttacttttccgcacttgattaagatgtaatttctttttccgggcttcggcccttcctttcatc |
39181046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 509
Target Start/End: Original strand, 18568658 - 18569150
Alignment:
| Q |
18 |
tgtaaggatggtagcatcgcggg-gtgtggaggacttatccgaggttcgcaaggcgagtggttagcggggttctccaaatttttagggaagtgtgatgct |
116 |
Q |
| |
|
||||||||||||| || ||||| | ||||| | ||||| |||||| | ||||||| ||||||| |||||||| ||||||||| ||||||||| ||| |
|
|
| T |
18568658 |
tgtaaggatggtaatattgcgggagcgtggatggcttattagaggtttgaaaggcgaatggttagtggggttcttcaaatttttggggaagtgtagcgct |
18568757 |
T |
|
| Q |
117 |
tttattgcagagctatggggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtga |
216 |
Q |
| |
|
||| |||| |||||||||| |||||||||||||||| | ||||| |||| ||||||||||||||||||| | ||||||||||||||| |||||||| | | |
|
|
| T |
18568758 |
tttgttgcggagctatgggaagttttggaaggtctc-gatgtgcaaaacatatggggttcactgcagtatacttaaatgtggattctttggtggttataa |
18568856 |
T |
|
| Q |
217 |
atattattacgagtgggaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaaca |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
18568857 |
atattattacgagtgggaaggaaagcaatgcaagtggtatgagtcttgttcaaaaaattagacaacttcttcaaatggaacaggaagtgaaagttaaaca |
18568956 |
T |
|
| Q |
317 |
ctcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggag-aatgagatgatgttttatgagtcgtgtccgactcaaat |
415 |
Q |
| |
|
||||||||||||| |||||| || ||||||||| |||||||||||||||||| |||||| | |||||||| |||| |||||||||||||| |||| |||| |
|
|
| T |
18568957 |
ctcgtatcgtgaaacaaatacgtacgctgatgcattagctaatattggatgtttcatggggaaatgagattatgtattatgagtcgtgtctgacttaaat |
18569056 |
T |
|
| Q |
416 |
taaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccctttcat |
509 |
Q |
| |
|
|| ||||||||||| || | ||||||| |||||||||||| |||||||||| ||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
18569057 |
tagccatttgttagatgtttatcaagcaaaggttacttttccacgcttgattatgatctaatttctttttccgggtttcatccctccctttcat |
18569150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 344 - 429
Target Start/End: Complemental strand, 2091133 - 2091048
Alignment:
| Q |
344 |
tgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttag |
429 |
Q |
| |
|
|||||| |||||||||||||| |||| |||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
2091133 |
tgatgctttagctaatattgggtgtagaatggggtatgagatgatgttttatgagtcttgtccgactcaaattaatcatttgttag |
2091048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 233 - 509
Target Start/End: Complemental strand, 36123966 - 36123688
Alignment:
| Q |
233 |
gaaggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagca |
332 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| |
|
|
| T |
36123966 |
gaaggaaagcaattcgagtggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatggaaagtgaaggttaaacactcatatcgtaaagca |
36123867 |
T |
|
| Q |
333 |
aataggtgcgctgatgcgttagctaatattggatgtatc--atggagaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagc |
430 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36123866 |
aataggtgcgctgatgcgctagctaatattggatgtatcatatggggaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatgtgttagc |
36123767 |
T |
|
| Q |
431 |
tgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccgggcttcggccctccctttcat |
509 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36123766 |
tgctgatcaagcgagggttacttttccgcatttgattaagatttaatttctttttccgggtttcggccctccctttcat |
36123688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 283 - 510
Target Start/End: Complemental strand, 24323603 - 24323376
Alignment:
| Q |
283 |
ttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatga |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24323603 |
ttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgtgctgatgcgttagctaatattggatgtatcatggggaatga |
24323504 |
T |
|
| Q |
383 |
gatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctt |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
24323503 |
gatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttcggcgcttgattaagatataatttctt |
24323404 |
T |
|
| Q |
483 |
tttccgggcttcggccctccctttcatc |
510 |
Q |
| |
|
||| |||||||||||||||||||||||| |
|
|
| T |
24323403 |
ttttcgggcttcggccctccctttcatc |
24323376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 481
Target Start/End: Original strand, 40342706 - 40342801
Alignment:
| Q |
386 |
gatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttct |
481 |
Q |
| |
|
|||||||||||| || | |||||||||||||| ||||||||| |||||||| ||| ||| || ||||| ||| |||||||||||||||||||| |
|
|
| T |
40342706 |
gatgttttatgactcttatccgactcaaattagtcatttgttaactgctgattaagaagggatttcttttttgcgtttgattaagatgtaatttct |
40342801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 291 - 503
Target Start/End: Original strand, 5699592 - 5699804
Alignment:
| Q |
291 |
atggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaataggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgt |
390 |
Q |
| |
|
||||||||||| || |||||| |||||||||||||| ||||| ||| || | |||||| ||||||||||| || |||| |||| |||| ||| | | |
|
|
| T |
5699592 |
atggaatgggaggttaaggttcaacactcgtatcgtaaagcacataattgtgttgatgctttagctaatatggggtgtagaatgggtcatgaaatggtat |
5699691 |
T |
|
| Q |
391 |
tttatgagtcgtgtccgactcaaattaaccatttgttagctgctgatcaagcgggggttacttttccgcgcttgattaagatgtaatttctttttccggg |
490 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| ||||| | | |||||||||||||||||||| ||| | | |
|
|
| T |
5699692 |
tttatgagtcttgtccgactcaaattagtcatttgttagctgctgatcaagcaggggtttcttttatgtgtttgattaagatgtaatttctctttttgag |
5699791 |
T |
|
| Q |
491 |
cttcggccctccc |
503 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5699792 |
cttcggccctccc |
5699804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 135 - 456
Target Start/End: Original strand, 14137690 - 14138002
Alignment:
| Q |
135 |
ggagttttggaaggtctccggtgtgcgaaacgtatggggttcactgcagtagaattaaatgtggattctctggtggttgtgaatattattacgagtggga |
234 |
Q |
| |
|
|||||||||||||||||||||||||| | | | | ||||||||| | |||||||| ||||||||| | || | || ||||||||||||| ||| || |
|
|
| T |
14137690 |
ggagttttggaaggtctccggtgtgcaagaagattaaggttcactgtaatagaattatatgtggattttttgatcgtggtgaatattattatgaggaggc |
14137789 |
T |
|
| Q |
235 |
aggaaagcaatgcgaggggtaggagtcttgttcaaaaaattagaaaacttcttcaaatggaatgggaagtgaaggttaaacactcgtatcgtgaagcaaa |
334 |
Q |
| |
|
|||| || |||||||| |||||||| ||||||| || |||||||||||| |||||| || | |||| ||||||| || |||| ||||| ||| |
|
|
| T |
14137790 |
aggagagtaatgcgagtggtaggagccttgttct--------gacaacttcttcaaaaggaatgtgacgggaagattaaacattcatatcatgaagaaaa |
14137881 |
T |
|
| Q |
335 |
taggtgcgctgatgcgttagctaatattggatgtatcatggagaatgagatgatgttttatgagtcgtgtccgactcaaattaaccatttgttagctgct |
434 |
Q |
| |
|
|| | ||||||| | || | |||||||||| | ||||||| |||||||||||| |||||||||||| ||| ||||| |||| | |||||||||| || | |
|
|
| T |
14137882 |
tatgcgcgctgacgtgtcaactaatattgggt-tatcatgaagaatgagatgacgttttatgagtcatgttcgacttaaataagtcatttgttagttgat |
14137980 |
T |
|
| Q |
435 |
gatcaagcgggggttacttttc |
456 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
14137981 |
gattaagcgggggttacttttc |
14138002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 5699423 - 5699476
Alignment:
| Q |
112 |
atgcttttattgcagagctatggggagttttggaaggtctccggtgtgcgaaac |
165 |
Q |
| |
|
|||||||||| || ||| | ||||||||||||||||||||||| | |||||||| |
|
|
| T |
5699423 |
atgcttttatagcggagttgtggggagttttggaaggtctccgatatgcgaaac |
5699476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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