View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16998_low_5 (Length: 237)
Name: NF16998_low_5
Description: NF16998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16998_low_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 237
Target Start/End: Original strand, 30995154 - 30995378
Alignment:
| Q |
14 |
tcaaaggcgcccaaatacaatctgctctgcaaggctcacaccaccatctaataagcaaaacctctcaagtaaaatatagcaagactttaccgaaaaaata |
113 |
Q |
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| T |
30995154 |
tcaaaggcgcccaaatacaatctgctctgcaaggctcacaccaccatctaataagcaaaacctctcaagtaaaatatagcaagactttaccgaaaaaata |
30995253 |
T |
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| Q |
114 |
ccaccctcctccatcatccccct-aaagaatctgcatcatccaaacctcgaaaaccgttgagaaagacttagaacacataatttagctatcatcttttaa |
212 |
Q |
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| T |
30995254 |
ccaccctcctccatcatccacctccaagaatctgcatcatccaaaccacgaaaaccgttgagaaagacttagaacacataatttaactatcatcttttaa |
30995353 |
T |
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| Q |
213 |
ttgtagtaattgcataccggtctcc |
237 |
Q |
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| T |
30995354 |
ttgtagtaattgcataccggtctcc |
30995378 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 38705881 - 38705939
Alignment:
| Q |
48 |
ctcacaccaccatctaataagcaaaacctctcaagtaaaatatagcaagactttaccga |
106 |
Q |
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| T |
38705881 |
ctcacaccaccctctagtaaacacaagctctcaagtaaattataacaagactttaccga |
38705939 |
T |
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