View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16999_high_2 (Length: 446)
Name: NF16999_high_2
Description: NF16999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16999_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Complemental strand, 41744176 - 41743744
Alignment:
| Q |
11 |
ttatactgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgagaataatatgtttgtcttgaca |
110 |
Q |
| |
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| T |
41744176 |
ttatattgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgagaataatatgtttgtcttgaca |
41744077 |
T |
|
| Q |
111 |
ttgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatagagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
41744076 |
ttgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgtgtattacttgatgagtttgtctctatacatgcatatagagt |
41743977 |
T |
|
| Q |
211 |
tgagtctaggaaaacgaagatgaaatggagacaaatgtaagtccaataacacatctctatcaacaatatatgatgacaatatgtgtggtaccacgttcat |
310 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
41743976 |
cgagtctaggaaaacgaagatgaaatgaagacaaatgtaagtccagtaacacatctctatcaacaatatatgatgacgatatgtgtgataccacgttcat |
41743877 |
T |
|
| Q |
311 |
atatgttttaagatgaagtccatctgcatatggatagagttgcactgctaaagtataatttaaaaatttacgttattaagtgataaaatgttgagtttat |
410 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41743876 |
atatgtcttaagatgaagtccatctgcatatggatagagtcgcactgctaaagtataatttaaaaatttacgttattaagtgataaaatgttgagtttat |
41743777 |
T |
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| Q |
411 |
aacaaactttttattaaatatattctttcttat |
443 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |
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| T |
41743776 |
aacatactttttattaaatatattctttcttat |
41743744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 341
Target Start/End: Complemental strand, 24622317 - 24621979
Alignment:
| Q |
12 |
tatactgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgagaataat------atgtttgtct |
105 |
Q |
| |
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|||| ||||||||||||||| ||||| |||||||||||||||||| | | | |||||||| ||||||||||||||||| | || ||||||| || |
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| T |
24622317 |
tatattgatgatgagaatgatgacgtgtaattatgatgatgatgagattgatgatgtttaccctttgatgacgatgagagtgatgaatatatgtttgcct |
24622218 |
T |
|
| Q |
106 |
tgacattgtacataatagggagagttttg---cattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgca |
202 |
Q |
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||| || | ||||||||| || | ||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||| |||| ||| ||||| |
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| T |
24622217 |
tgatgttatgcataataggaaggctcttgttgcattaatatgtgaattgttgatgatgtgaaaatgtgtattacttgatgagtcggtcttcatgcatgca |
24622118 |
T |
|
| Q |
203 |
tatagagttgagtctaggaaaacgaagatgaaatggagacaaatgtaagtccaataacacatctctatcaacaatatatgatgacaatatgtgtggtacc |
302 |
Q |
| |
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|||||||||||||||||||||| ||||||||| | |||| | ||||| |||| ||||| |||||| ||||||| ||||||||| ||| ||||||||| |
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| T |
24622117 |
tatagagttgagtctaggaaaaagaagatgaagagaagacgagtgtaaatccagtaacatatctctgacaacaatttatgatgacgataggtgtggtact |
24622018 |
T |
|
| Q |
303 |
acgttcatatatgttttaagatgaagtccatctgcatat |
341 |
Q |
| |
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|| ||||||||||| || |||| |||| || ||||||| |
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|
| T |
24622017 |
acattcatatatgtcataggatggagtcaatatgcatat |
24621979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 99 - 330
Target Start/End: Original strand, 34635732 - 34635965
Alignment:
| Q |
99 |
tttgtcttgacattgtacataatagggagagttttgcattaata-tgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatgg |
197 |
Q |
| |
|
|||||||||| | ||||||||||| | |||||| ||||| ||| |||||||| |||||||| ||| | || || ||||||||||||||||||| ||| |
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| T |
34635732 |
tttgtcttgataatgtacataataagaagagtt--gcatttataatgtgaattgttgatgatatgatggtgtttaatacttgatgagtttgtctccatgc |
34635829 |
T |
|
| Q |
198 |
atgcatatagagttgagtctagg--aaaacgaagatgaaatggagacaaatgtaagtccaataacacatctct-atcaacaatatatgatgac-aatatg |
293 |
Q |
| |
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|| |||||||||||| ||||||| |||| || ||||||||| |||| |||||||||||| |||||||||||| | ||||||| |||||||| || | | |
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| T |
34635830 |
atacatatagagttgtgtctaggaaaaaatgaggatgaaatgaagacgaatgtaagtccagtaacacatctctgacaaacaata-atgatgacgaaaagg |
34635928 |
T |
|
| Q |
294 |
tgtggtaccacgttcatatatgttttaagatgaagtc |
330 |
Q |
| |
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||||||||||| || ||||| || ||| ||||||||| |
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| T |
34635929 |
tgtggtaccacatttatataggtcttaggatgaagtc |
34635965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 266
Target Start/End: Original strand, 18785371 - 18785465
Alignment:
| Q |
172 |
attacttgatgagtttgtctctatggatgcatatagagttgagtctaggaaaacgaagatgaaatggagacaaatgtaagtccaataacacatct |
266 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |||||||| |||||||| |||||||||||| |||| |||||||||||| |||||||||| |
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| T |
18785371 |
attacttgatgagtttgtctccatgcatgcatataaagttgagtttaggaaaatgaagatgaaatgaagacgaatgtaagtccagtaacacatct |
18785465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 18785223 - 18785348
Alignment:
| Q |
11 |
ttatactgatgatgagaatgacgacgtctaattatgatgatgatgaaaataacaatgtttactctttgatgacgatgag------aataatatgtttgtc |
104 |
Q |
| |
|
||||| |||| |||||||||| || |||||||| |||||| ||||| ||| | ||||||||||||| ||||| ||||| ||| |||||||||| |
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| T |
18785223 |
ttatattgattatgagaatgatgatgtctaattgtgatgaagatgagaatgatgatgtttactctttaatgacaatgagaatgataatgatatgtttgtt |
18785322 |
T |
|
| Q |
105 |
ttgacattgtacataatagggagagt |
130 |
Q |
| |
|
||||| |||| ||||||||||||||| |
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|
| T |
18785323 |
ttgacgttgtgcataatagggagagt |
18785348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 22521627 - 22521540
Alignment:
| Q |
99 |
tttgtcttgacattgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtat-tacttgatgagt |
185 |
Q |
| |
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|||||||||| | || ||||||||| ||||| ||||||| ||||||||||| ||||| ||||||||| | |||| |||||||||||| |
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| T |
22521627 |
tttgtcttgatgtcgtgcataataggaagagtcttgcattgatatgtgaattgttgatcatgtgaagacgtgtatatacttgatgagt |
22521540 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 19019729 - 19019617
Alignment:
| Q |
99 |
tttgtcttgacattgtacataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtat-tacttgatgagtttgtctctatgg |
197 |
Q |
| |
|
|||||||||| |||| ||||||||| | ||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||| || |
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| T |
19019729 |
tttgtcttgatgttgtgcataataggaatagtcttgcattaatatgtgaattgttgatgatgtgaagatgtgtatatacttgatgagttagtcttcatac |
19019630 |
T |
|
| Q |
198 |
atgcatatagagt |
210 |
Q |
| |
|
||||||||||||| |
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|
| T |
19019629 |
atgcatatagagt |
19019617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 33499706 - 33499810
Alignment:
| Q |
116 |
cataatagggagagttttgcattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatagagttgagt |
215 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||| ||||||||||| | || |||||||||| |||| |||||| ||| |||||||||||||||| | |
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|
| T |
33499706 |
catattagggagagtctagcattaatatgtgaattgttgatgatgtgcaaatatgtattacttgtcgagtatgtctccatgcatgcatatagagttgatt |
33499805 |
T |
|
| Q |
216 |
ctagg |
220 |
Q |
| |
|
||||| |
|
|
| T |
33499806 |
ctagg |
33499810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 43155284 - 43155380
Alignment:
| Q |
135 |
cattaatatgtgaattattgatgatgtgaagatgcgtattacttgatgagtttgtctctatggatgcatatagagttgagtctaggaaaacgaagatg |
232 |
Q |
| |
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|||||||||||||||| |||||||||||||| | |||||||||| ||||| |||||| || |||||| ||| |||||| ||||||||| ||||||| |
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| T |
43155284 |
cattaatatgtgaattgttgatgatgtgaaggcgtgtattacttgttgagtctgtctccat-catgcatttagggttgagcctaggaaaaagaagatg |
43155380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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