View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16999_high_3 (Length: 434)
Name: NF16999_high_3
Description: NF16999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16999_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 3 - 404
Target Start/End: Original strand, 47038034 - 47038435
Alignment:
| Q |
3 |
taacaaaatattgggttgattaatagatgatggatattaaagattacagagagaaactaagtatcatatcaataatattaaacctctaagtgaaaaagca |
102 |
Q |
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| T |
47038034 |
taacaaaatattgggttgattaatagatgatggatattaaagattacagagagaaactaagtatcatatcaataatattaaacctctaagtgaaaaagca |
47038133 |
T |
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| Q |
103 |
ttaataatcttcaggttctggaaacttgtccaaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttcaagagccgcttga |
202 |
Q |
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| T |
47038134 |
ttaataatcttcaggttctggaaacttgttcaaatcaggtttcacatcagcgttgaattgatcggaatcagaacgagaagaagcttgaagagccgcttga |
47038233 |
T |
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| Q |
203 |
agagcatcaactctagcaccgactttggtagcttttttgcgtattaaatcagcagacatgttaccttgctgaatagaaccgtcgttgttttcttcgtcgt |
302 |
Q |
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| T |
47038234 |
agagcatcaactctagcaccgactttggtagcttttttgcgtattaaatcagcagacatgttaccttgctgaatagaaccgtccttgttttcttcgtcgt |
47038333 |
T |
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| Q |
303 |
cttcgagcaataattcggggaaattaagacgagccgtaggacctcttaaatagaatacggcggtgtcgcaggcacgagcagcagctaccggagtgatgta |
402 |
Q |
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| T |
47038334 |
cttcgagcaataattcggggaaattaagacgagccgtaggacctcttaaatagaatacggcggtgtcgtaggcacgagcagcagctaccggagtgatgta |
47038433 |
T |
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| Q |
403 |
ag |
404 |
Q |
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| T |
47038434 |
ag |
47038435 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 6026885 - 6026845
Alignment:
| Q |
197 |
gcttgaagagcatcaactctagcaccgactttggtagcttt |
237 |
Q |
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| T |
6026885 |
gcttgaagagcatcaactctagcaccaacttcagtagcttt |
6026845 |
T |
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