View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16999_high_7 (Length: 360)

Name: NF16999_high_7
Description: NF16999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16999_high_7
NF16999_high_7
[»] chr6 (21 HSPs)
chr6 (35-356)||(2983418-2983744)
chr6 (34-309)||(2935150-2935429)
chr6 (34-310)||(2929860-2930138)
chr6 (30-310)||(2974554-2974828)
chr6 (67-360)||(2965111-2965414)
chr6 (30-276)||(2996658-2996904)
chr6 (35-325)||(2938012-2938286)
chr6 (127-310)||(2954726-2954911)
chr6 (44-192)||(2927721-2927869)
chr6 (172-360)||(2986421-2986625)
chr6 (60-217)||(2658311-2658474)
chr6 (34-175)||(3003174-3003311)
chr6 (30-175)||(2952483-2952624)
chr6 (245-359)||(2927882-2928001)
chr6 (225-358)||(2658141-2658278)
chr6 (184-360)||(2952657-2952848)
chr6 (184-310)||(3003016-3003141)
chr6 (312-360)||(3002947-3002995)
chr6 (310-360)||(2974847-2974897)
chr6 (310-360)||(2935449-2935499)
chr6 (322-360)||(2954942-2954980)
[»] chr7 (1 HSPs)
chr7 (34-305)||(3339576-3339850)
[»] scaffold0024 (2 HSPs)
scaffold0024 (30-289)||(34513-34773)
scaffold0024 (225-310)||(43599-43687)
[»] chr3 (2 HSPs)
chr3 (35-310)||(49618963-49619249)
chr3 (36-312)||(49613989-49614269)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 35 - 356
Target Start/End: Original strand, 2983418 - 2983744
Alignment:
Q  35 aatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctca 134  Q
    |||||| || |||||||||||||  |||| |||||||||||| |||||||||||||| | | |||||||||| |||||||| ||||||| ||||||||||    
T  2983418 aatcctaggaataagttgaaggccactctcaggcgtgattatggcaatactccttggaaaattgctgcttccgttgctggagtcttactacttgttctca 2983517  T
Q  135 ctataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattatcacc 234  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||   |||||||||    
T  2983518 ctataattcaaacagtttgttctgtcttgcaaatagtacaagcatcctagtcatttctttcattgttgagttcataattattgttattctcattatcacc 2983617  T
Q  235 aatgtacctcgtttgtttcaatggtttcat--tattttgtgtgttgt---attagattgaaattgtactttcatataaataaagcaacttgatcatgttg 329  Q
     |||||| | ||||||||||||||||||||  ||||| |||||||||    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2983618 catgtacgttgtttgtttcaatggtttcattatatttcgtgtgttgtgtacttagattgaaattgtaatttcatataaataaagcaacttgatcatgttg 2983717  T
Q  330 tattgttgtcgaacaaaatgggtctga 356  Q
    |||||||||  |||||||| |||||||    
T  2983718 tattgttgttaaacaaaattggtctga 2983744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 34 - 309
Target Start/End: Original strand, 2935150 - 2935429
Alignment:
Q  34 gaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctc 133  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| |||||    
T  2935150 gaatccttggcataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgctggaatcttactactttttctc 2935249  T
Q  134 actataattcaaacagtttgttctgtcttgcaagtagt---acaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattat 230  Q
    ||| || ||||| |||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2935250 actttacttcaatcagtttgttctgtcttgcaagttgtacaacaagcctcctagtgatttctttcattgttgagttcataattatttctattagtattat 2935349  T
Q  231 caccaatgtacctcgtttgtttcaatggtttcattat-tttgtgtgttgtattagattgaaattgtactttcatataaat 309  Q
       |||||||| | ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||    
T  2935350 tttcaatgtacgttgtttgtttcaatggtttcattatctttttgtgttgcattagattgaaattgtaatttcatataaat 2935429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 34 - 310
Target Start/End: Original strand, 2929860 - 2930138
Alignment:
Q  34 gaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctc 133  Q
    |||||||||||||| |||||||||| |||| |||||||||||||| | |||||||||||| ||||||||||||||||||||| ||||||| ||| |||||    
T  2929860 gaatccttggcataggttgaaggctactctcaggcgtgattattgaagtactccttggcaaactgctgcttccattgctggattcttactactttttctc 2929959  T
Q  134 actataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctag--tgatttctttcattgttgagttcataattattgctattagtattatc 231  Q
    ||| || ||||| |||||||||||||||||||||| |||||||||||||||  |||||||||| |||||||||||||||||||||| ||||  |||||||    
T  2929960 actttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagcttgatttcttttattgttgagttcataattattgttattcttattatc 2930059  T
Q  232 accaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgtattagattgaaattgtactttcatataaata 310  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  2930060 accaatgtacgttgtttgtttcaatggtttcattattttgtgtgttgtattagatcaaaattgtaatttcatataaata 2930138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 2974554 - 2974828
Alignment:
Q  30 gtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgt 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||    
T  2974554 gtaggaatccttggcataggttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatttttctacttgt 2974653  T
Q  130 tctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 229  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||| |||      
T  2974654 tctcactataattcaaagagtttgttctgtcttgcaagtagtacaagcatcctagtgatttctttcattgttgagttcataattattttcattattat-- 2974751  T
Q  230 tcaccaatgtacctcgtttgtttcaatggtttcattat-tttgtgtgttgtattagattgaaattgtactttcatataaata 310  Q
        |||||||| | |||||||||||| |||||||||| ||| ||||||| |||||||||||||| || |||||||||||||    
T  2974752 ----caatgtacgttgtttgtttcaat-gtttcattatctttttgtgttgcattagattgaaattataatttcatataaata 2974828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 67 - 360
Target Start/End: Original strand, 2965111 - 2965414
Alignment:
Q  67 gcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcactataattcaaacagtttgttctgtcttgcaa 166  Q
    ||||||||| |||| ||||||||||||  ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||    |||||    
T  2965111 gcgtgattactgcagtactccttggcaagctgctgcttcctttgctggaatcttactacttgttctcactttaattcaaacagtttgttct----tgcaa 2965206  T
Q  167 gtagtacaa---------gcctcctagtgatttctttcattgttgagttcataattattgctattagtattatcaccaatgtacctcgtttgtttcaatg 257  Q
    |||||||||         || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  2965207 gtagtacaacaacctaatgcttcctagtgatttctttcattgttgagttcataattattgctattagtattatcaccaatgtacgttgtttgtttcaatg 2965306  T
Q  258 gtttcatta--ttttgtgtgttgt---attagattgaaattgtactttcatataaataaagcaacttgatcatgttgtattgttgtcgaacaaaatgggt 352  Q
    |||||||||  |||||||||||||    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  2965307 gtttcattatcttttgtgtgttgtgtccttagattgaaattgtaatttcatataaataaagcaacttgatcatgttgtattgttgttgaacaaaattggt 2965406  T
Q  353 ctgatagt 360  Q
    ||||||||    
T  2965407 ctgatagt 2965414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 30 - 276
Target Start/End: Complemental strand, 2996904 - 2996658
Alignment:
Q  30 gtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgt 129  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||| |||| |||||||||||  ||||||||||| ||||||||||  |||| |||||    
T  2996904 gtaggaatccttggcataagttgaaggctactctcaggcgtgattatggcaagactccttggcaagctgctgcttcctttgctggaattgtactacttgt 2996805  T
Q  130 tctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 229  Q
    ||||||| | |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2996804 tctcacttttattcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 2996705  T
Q  230 tcaccaatgtacctcgtttgtttcaatggtttcattattttgtgtgt 276  Q
    |||||||||||  | ||||||||||||||||||||||||||| ||||    
T  2996704 tcaccaatgtaagttgtttgtttcaatggtttcattattttgggtgt 2996658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 35 - 325
Target Start/End: Original strand, 2938012 - 2938286
Alignment:
Q  35 aatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctca 134  Q
    |||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||    
T  2938012 aatccttggcataagttgaaggctactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaatcttactacttattctca 2938111  T
Q  135 ctataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattatcacc 234  Q
    || || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |                   
T  2938112 ctttacttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgtt--------------- 2938196  T
Q  235 aatgtacctcgtttgtttcaatggtttcattattttgtgtgttgtattagattgaaattgtactttcatataaataaagcaacttgatcat 325  Q
    ||||||| | |||||||||||| |||||||||||||||||||||| |||||| |||| |||| ||| ||||||||||| ||||||||||||    
T  2938197 aatgtacgttgtttgtttcaat-gtttcattattttgtgtgttgtgttagatcgaaaatgtaatttgatataaataaaacaacttgatcat 2938286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 127 - 310
Target Start/End: Original strand, 2954726 - 2954911
Alignment:
Q  127 tgttctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagta 226  Q
    |||| ||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  2954726 tgttatcactttacttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcaatgttgagttcat-attattgctattagta 2954824  T
Q  227 ttatcaccaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgt---attagattgaaattgtactttcatataaata 310  Q
    |||||||||||||| || ||||||||| |||||||||||||||||||||||||    |||||| || |||||| |||||||||||||    
T  2954825 ttatcaccaatgtaacttgtttgtttctatggtttcattattttgtgtgttgtgtacttagatcgatattgtaatttcatataaata 2954911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 44 - 192
Target Start/End: Original strand, 2927721 - 2927869
Alignment:
Q  44 cataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcactataattc 143  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| || |||    
T  2927721 cataagttgaaggctactctcaggcgtgattattgcaaaactccttggcaaactgctgcttccattgcgggaatcttactacttgttctcactttacttc 2927820  T
Q  144 aaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttct 192  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||    
T  2927821 aatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttct 2927869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 172 - 360
Target Start/End: Original strand, 2986421 - 2986625
Alignment:
Q  172 acaagcctcctagtgatttctttcattgttgagttcataattattgctattagta----------------ttatcaccaatgtacctcgtttgtttcaa 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||                |||||||||| |||| | |||||||||||    
T  2986421 acaagcctcctagtgatttctttcattgttgagttcataattattgttattattaattattattattattattatcaccaacgtacattgtttgtttcaa 2986520  T
Q  256 tggtttcattattttgtgtgttgtattagattgaaattgtactttcatataaataaagcaacttgatcatgttgtattgttgtcgaacaaaatgggtctg 355  Q
    ||||||||||| |||||||||| | |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  2986521 tggtttcattagtttgtgtgttttgttagatcgaaattgtaatttcatataaataaatcaacttgatcatgttgtattgttgttgaacaaaatgggtctg 2986620  T
Q  356 atagt 360  Q
    |||||    
T  2986621 atagt 2986625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 60 - 217
Target Start/End: Complemental strand, 2658474 - 2658311
Alignment:
Q  60 ctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcactataattcaaacagtttgttctgt 159  Q
    |||| |||||||||||||||| |||||||||| |  ||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  2658474 ctctgaggcgtgattattgcagtactccttggaaagctggtgcttcctttgctggaatcttactacttattctcactataattcaaacagtttgttctgt 2658375  T
Q  160 cttgcaagtagtacaa------gcctcctagtgatttctttcattgttgagttcataattattg 217  Q
    ||| ||||||||||||      | ||||||||||||||||||||||||  ||||||||||||||    
T  2658374 ctttcaagtagtacaacctaatggctcctagtgatttctttcattgttcggttcataattattg 2658311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 3003311 - 3003174
Alignment:
Q  34 gaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctc 133  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||| ||||    
T  3003311 gaatccatggcataagttgaaggctactctcaggcgtgattattgcaaaactccctggcaaactgctgcttccattgctggaatcttactccttgctctc 3003212  T
Q  134 actataattcaaacagtttgttctgtcttgcaagtagtacaa 175  Q
    ||| || ||||||||||||||    |||||||||||||||||    
T  3003211 actttacttcaaacagtttgt----tcttgcaagtagtacaa 3003174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 2952483 - 2952624
Alignment:
Q  30 gtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgt 129  Q
    |||| ||||||||| |||||||||| ||  |||| |||||||||||| |||| ||||||||||| |||||||||||||||||||||||| |||| ||||     
T  2952483 gtagtaatccttggaataagttgaaagccactctgaggcgtgattatggcaaaactccttggcaaactgctgcttccattgctggaatcgtactccttgc 2952582  T
Q  130 tctcactataattcaaacagtttgttctgtcttgcaagtagtacaa 175  Q
    ||||||| || ||||||||||||||    |||||||||||||||||    
T  2952583 tctcactttacttcaaacagtttgt----tcttgcaagtagtacaa 2952624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 245 - 359
Target Start/End: Original strand, 2927882 - 2928001
Alignment:
Q  245 gtttgtttcaatggtttcattat--tttgtgtgttgtat---tagattgaaattgtactttcatataaataaagcaacttgatcatgttgtattgttgtc 339  Q
    ||||||| |||||||||||||||  |||||||||||| |   |||||||||||| || ||||||||||||||| |||||||||||||||||||||||||     
T  2927882 gtttgttccaatggtttcattatcttttgtgtgttgtgtacttagattgaaattataatttcatataaataaatcaacttgatcatgttgtattgttgtt 2927981  T
Q  340 gaacaaaatgggtctgatag 359  Q
    ||||||||||||||||||||    
T  2927982 gaacaaaatgggtctgatag 2928001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 225 - 358
Target Start/End: Complemental strand, 2658278 - 2658141
Alignment:
Q  225 tattatcaccaatgtacctcgtttgtttcaatggtttcattat--tttgtgtgttgtat---tagattgaaattgtactttcatataaataaagcaactt 319  Q
    ||||||| ||||||||| | ||||||||||||| |||||||||  |||||||||||| |   || |||||||||||| ||||||||||||||||||||||    
T  2658278 tattatcgccaatgtacgttgtttgtttcaatg-tttcattatcttttgtgtgttgtgtacttatattgaaattgtaatttcatataaataaagcaactt 2658180  T
Q  320 gatcatgttgtattgttgtcgaacaaaatgggtctgata 358  Q
    ||||||||| ||||||||| | ||||||||||| |||||    
T  2658179 gatcatgttctattgttgttgcacaaaatgggtttgata 2658141  T

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Target: chr6; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 184 - 360
Target Start/End: Original strand, 2952657 - 2952848
Alignment:
Q  184 gtgatttctttcattgttgagttcataattattgctattagtattatcaccaatgtacctcgtttgtttcaatggtttcattattttgt--gtgttgtat 281  Q
    |||||||||||||||||||||||||||||||||   |||| ||||||||   |||||| | |||||||||||||||||||||| | | |  |||||| ||    
T  2952657 gtgatttctttcattgttgagttcataattatt---attattattatca---atgtacgttgtttgtttcaatggtttcattaatctctttgtgttgcat 2952750  T
Q  282 tagattgaaattgtactttcatataaat-------------------aaagcaacttgatcatgttgtattgttgtcgaacaaaatgggtctgatagt 360  Q
    ||||||||||||||| ||||||||||||                   ||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  2952751 tagattgaaattgtaatttcatataaatgggtgttctgctaaataaaaaagcaacttgatcatgttgtattgttgttgaacaaaattggtctgatagt 2952848  T

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Target: chr6; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 184 - 310
Target Start/End: Complemental strand, 3003141 - 3003016
Alignment:
Q  184 gtgatttctttcattgttgagttcataattattgctattagtattatcaccaatgtacctcgtttgtttcaatg-gtttcattat-tttgtgtgttgtat 281  Q
    ||||| |||||||||||| ||||||||||||||   |||| |||||||| |||||||| | ||||||||||||  |||||||||| ||| ||||||| ||    
T  3003141 gtgatgtctttcattgttaagttcataattatt---attattattatcatcaatgtacgtagtttgtttcaatatgtttcattatctttttgtgttgcat 3003045  T
Q  282 tagattgaaattgtactttcatataaata 310  Q
     |||||||||||||| |||||||||||||    
T  3003044 cagattgaaattgtaatttcatataaata 3003016  T

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Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 3002995 - 3002947
Alignment:
Q  312 agcaacttgatcatgttgtattgttgtcgaacaaaatgggtctgatagt 360  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3002995 agcaacttgatcatgttgtattgttgttgaacaaaatgggtctgatagt 3002947  T

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Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 2974847 - 2974897
Alignment:
Q  310 aaagcaacttgatcatgttgtattgttgtcgaacaaaatgggtctgatagt 360  Q
    ||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  2974847 aaagcaacttgatcatgttgtattgttgttgaacaaaattggcctgatagt 2974897  T

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Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 360
Target Start/End: Original strand, 2935449 - 2935499
Alignment:
Q  310 aaagcaacttgatcatgttgtattgttgtcgaacaaaatgggtctgatagt 360  Q
    ||||||  ||||||||||||||||||||| ||||||||| |||||||||||    
T  2935449 aaagcatattgatcatgttgtattgttgttgaacaaaattggtctgatagt 2935499  T

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Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 2954942 - 2954980
Alignment:
Q  322 tcatgttgtattgttgtcgaacaaaatgggtctgatagt 360  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  2954942 tcatgttttattgttgttgaacaaaatgggtctgatagt 2954980  T

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Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 34 - 305
Target Start/End: Original strand, 3339576 - 3339850
Alignment:
Q  34 gaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctc 133  Q
    |||||||||||||| |||||||||  |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||| |||||||||    
T  3339576 gaatccttggcataggttgaaggccactctcaggcgtgattattgcaatactccttggcaaactgctgcttccattgctggaattgtactacttgttctc 3339675  T
Q  134 actataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagt---tcataattattgctattagtattat 230  Q
    ||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||   |||||||||||||| ||||||||||    
T  3339676 actttacttcaatcagtttgttctgtcttgcaagtagtacaggcctcctagtgatttctttctttgttgagttcatcataattattgctcttagtattat 3339775  T
Q  231 caccaatgtacctcgtttgtttcaatggtttcattat-tttgtgtgttgtattagattgaaattgtactttcatat 305  Q
     | |||||||| | ||||||||| || |||||||||| ||| ||||||| ||||||| ||||||||| ||| ||||    
T  3339776 tatcaatgtacgttgtttgtttccat-gtttcattatctttttgtgttgcattagatcgaaattgtaattttatat 3339850  T

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Target: scaffold0024 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 30 - 289
Target Start/End: Complemental strand, 34773 - 34513
Alignment:
Q  30 gtaggaatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgt 129  Q
    |||| ||||||||| ||| |||||||||| |||| |||||||||||| |||| ||||||||||| |||||||||||| |||||||||| ||||| |||||    
T  34773 gtagtaatccttggaataggttgaaggcttctctcaggcgtgattatggcaaaactccttggcaaactgctgcttccgttgctggaattttactacttgt 34674  T
Q  130 tctcactataattcaaacagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 229  Q
    ||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34673 tctcactttgcttcaatcagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtatta 34574  T
Q  230 tcaccaatgtacctcgtttgtttcaatggtttcatta--ttttgtgtgttgtattagattga 289  Q
    | | |||| |||   |||||||||||| |||||||||  ||||  |||||| ||||||||||    
T  34573 ttatcaatttacgctgtttgtttcaat-gtttcattatctttttggtgttgcattagattga 34513  T

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Target: scaffold0024; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 310
Target Start/End: Complemental strand, 43687 - 43599
Alignment:
Q  225 tattatcaccaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgt---attagattgaaattgtactttcatataaata 310  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||    
T  43687 tattatcaccaatgtacgttgtttgtttcaatggtttcattattttgtgtgttgtgtaattagattgaaattgtaatttcatataaata 43599  T

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Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 310
Target Start/End: Original strand, 49618963 - 49619249
Alignment:
Q  35 aatccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctca 134  Q
    ||||||||||||||  |||||||| |||| |||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||     
T  49618963 aatccttggcataaactgaaggctactctcaggcgtgattatggcagtactccttggcaaactgctgcttccattgctggaattttactacttgttctct 49619062  T
Q  135 ctataattcaaacagtttgttctgtcttgcaagtagtaca-------------agc-ctcctagtgatttctttcattgttgagttcataattattgcta 220  Q
    || || ||||| ||||||||||| |||||||||| |||||             ||  ||  |||| | |||  |||||||||||||||| |||||||  |    
T  49619063 ctttacttcaatcagtttgttctatcttgcaagttgtacagcagtataatgtaagtactagtagtaagttcaatcattgttgagttcatgattattgaca 49619162  T
Q  221 ttagtattatcaccaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgtattagattgaaattgtactttcatataaata 310  Q
    |||   ||||||||||| ||| | ||||||| |||||||||||||||  ||| |||||||||||||||||||| || | | |||||||||    
T  49619163 tta---ttatcaccaatttacgttgtttgttccaatggtttcattatcatgtttgttgtattagattgaaattctaatattatataaata 49619249  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 312
Target Start/End: Original strand, 49613989 - 49614269
Alignment:
Q  36 atccttggcataagttgaaggctgctctaaggcgtgattattgcaatactccttggcacactgctgcttccattgctggaatcttactgcttgttctcac 135  Q
    ||||||||||||  ||||||||  |||| || |||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||| ||| ||||| |    
T  49613989 atccttggcatagattgaaggcgactctcagacgtgattattgcaacagtccttggcaaactgctgcttccattgctggaattttactacttattctctc 49614088  T
Q  136 tataattcaaacagtttgttctgtcttgcaagtagtacaa---------gcctcctagtgatttctttcattgttgagttcataattattgctattagta 226  Q
    | || ||||| |||||||| | || |||||||| ||||||         |  || |||| | |||  |||||||||| |||||||||||||  |||| ||    
T  49614089 tttacttcaatcagtttgtgcagtgttgcaagttgtacaacaatataatgattcatagtaagttcaatcattgttgaattcataattattgtgattatta 49614188  T
Q  227 ttatcaccaatgtacctcgtttgtttcaatggtttcattattttgtgtgttgtattagattgaaattgtactttcatataaataaa 312  Q
    |||| |||||| ||       ||||||||||||||||||||||||  ||||||| ||||||||||||| |  ||||||||||||||    
T  49614189 ttattaccaattta-----agtgtttcaatggtttcattattttgcatgttgtactagattgaaattgcaacttcatataaataaa 49614269  T

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