View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16999_high_8 (Length: 350)
Name: NF16999_high_8
Description: NF16999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16999_high_8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 38644915 - 38645257
Alignment:
| Q |
8 |
tcgaagaaaatatgaagattcattagatattacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaa |
107 |
Q |
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| T |
38644915 |
tcgaagaaaatatgaagattcattagatattacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaa |
38645014 |
T |
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| Q |
108 |
tggctgcaactcaactatgcagcttgaaacaaaatggttagctaaagagtcatattctgtgattcaacgacttcagctcccatcagcaaaagatcaacta |
207 |
Q |
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| T |
38645015 |
tggctgcaactcaactatgcagcttgaaacaaaatggttagctaaagagtcatattctgtgattcaacgacttcagctcccatcagcaaaagatcaacta |
38645114 |
T |
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| Q |
208 |
aacttgtctcttccattagctcttcttgaactgcattccaataagattcttcttccctcgaaacaaacacatttttgcggccttcttcggtaactccacc |
307 |
Q |
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| T |
38645115 |
aacatgtctcttccattagctcttcttgaactgcattccaataagattcttcttccctcgaaacaaacacatttttgcggcctttttcggtaactccacc |
38645214 |
T |
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| Q |
308 |
acacaattcattctttagagccattgcctgttcatgatttatg |
350 |
Q |
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| T |
38645215 |
acacaattcattctctagagccattgcctgttcatgatttatg |
38645257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 152 - 350
Target Start/End: Complemental strand, 38899445 - 38899247
Alignment:
| Q |
152 |
aagagtcatattctgtgattcaacgacttcagctcccatcagcaaaagatcaactaaacttgtctcttccattagctcttcttgaactgcattccaataa |
251 |
Q |
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| T |
38899445 |
aagagtcatgttttgtgattcagcagcttcagctcctatcagcaaaagatcaactaaacttgtctcttccattaactcttcttgaacttccttccaataa |
38899346 |
T |
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| Q |
252 |
gattcttcttccctcgaaacaaacacatttttgcggccttcttcggtaactccaccacacaattcattctttagagccattgcctgttcatgatttatg |
350 |
Q |
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| T |
38899345 |
gaatctttttccctcgaaacaaacacattttcgcggcctttttctgtaactccaccacacaattcatactctagagccattgcctgttcatgatttatg |
38899247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 155
Target Start/End: Complemental strand, 38657082 - 38656935
Alignment:
| Q |
13 |
gaaaatatgaagattcattagat-attacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaatggc |
111 |
Q |
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| T |
38657082 |
gaaaatatgatgaatcattagattattatatcagtagatttagattgatgaagtctagaagtatgatcatgatctctgagta-gaattggttgaaatggc |
38656984 |
T |
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| Q |
112 |
tgca-----actcaactatgcagcttgaaacaaaatggttagctaaaga |
155 |
Q |
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| T |
38656983 |
tgcagtatggctcaactatgcagtttgaaacaaagtggttagccaaaga |
38656935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 16805848 - 16805923
Alignment:
| Q |
36 |
attacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaatggc |
111 |
Q |
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| T |
16805848 |
attacattagttgatttagattgatgaaggctagatgtattacaatgattccttagtatgcattagttgaaatggc |
16805923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 23955879 - 23955980
Alignment:
| Q |
17 |
atatgaagattcattagat-attacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaatggctgca |
115 |
Q |
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| T |
23955879 |
atatgacgaatcattagatgactacatcaatagatttaggttgattaaggctagatgtatcacaatgattcctgaacatgaattggtttaaatggctgca |
23955978 |
T |
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| Q |
116 |
ac |
117 |
Q |
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|| |
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| T |
23955979 |
ac |
23955980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 22769060 - 22769149
Alignment:
| Q |
11 |
aagaaaatatgaagattcattagat-attacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaatt |
99 |
Q |
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| T |
22769060 |
aagaaaagatgatgaatcattagatgattacatcagtagatttagattgatgaaggctagatcaacgacaatgattcctgagtatgaatt |
22769149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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