View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16999_low_1 (Length: 507)
Name: NF16999_low_1
Description: NF16999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16999_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 24 - 494
Target Start/End: Original strand, 16917159 - 16917623
Alignment:
| Q |
24 |
tctctcggttccctacagaaactctacatttcatgttgtcgtaatcttgagtccattcctaacatgtcttcgagttctcttcaagttttgagctttgcac |
123 |
Q |
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| T |
16917159 |
tctctcagttccctacagaaactctacatttcatgttgtggtaatcttgagtccattcctaacatgtcttcgagttctcttcaagttttgggctttgcac |
16917258 |
T |
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| Q |
124 |
tttgcaataggttaaaatccattattgtcgcaaa-tacattattgtcgcaaactagactttggagacttcaaatacattattgtcgcaaactcattttac |
222 |
Q |
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| T |
16917259 |
tttgcaatagcttaaaatcc----ttgccccaaagtacgacag---ccctaactagtcttcagagacttcaaatacattattgtcccaaactcattttac |
16917351 |
T |
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| Q |
223 |
cagctaatatgaacatgttaacttcccttcgtgaagtgagtatcatgggtgcggataaaaggcgcaggttatataacggcttagaacacattccgtcgct |
322 |
Q |
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| T |
16917352 |
cagctaatatgaacatgttaacttcccttcgtaaagtgactatcatgggtgcggataaaaggcgcaggttatataacggcttagaacacattccctcgct |
16917451 |
T |
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| Q |
323 |
gcaaaatttgtctctgacagattttccttctcttagatctttgccagactggttgggaaacacgcctactcttcaggaattagaaattagtaagtttcct |
422 |
Q |
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| T |
16917452 |
ggaaaatttgtctctgacagattttccttttcttagatctttgccagactggttgggaaacacgctatctcttcagaaattagaaattagtaagtttcct |
16917551 |
T |
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| Q |
423 |
atcttaaccgagttaccagacaactttgaccaacacaaaaacttgcagaaactaagtattgatagatgtcct |
494 |
Q |
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| T |
16917552 |
gtgttaacctcactaccagacaactttgagcaactcgaaaacttgcagaaactaagtattgatagatgtcct |
16917623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 185 - 495
Target Start/End: Original strand, 16912128 - 16912438
Alignment:
| Q |
185 |
gagacttcaaatacattattgtcgcaaactcattttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcatgggtgcggataaaagg |
284 |
Q |
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| T |
16912128 |
gagacttataatacactattgtcccgaactcattttaccagctaatatgaacatgttaaattcccttcgtgaagtgagtatcatgggtggggatagaagg |
16912227 |
T |
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| Q |
285 |
cgcaggttatataacggcttagaacacattccgtcgctgcaaaatttgtctctgacagattttccttctcttagatctttgccagactggttgggaaaca |
384 |
Q |
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| T |
16912228 |
cgcgggatatataacggcttagaagacattcccttgctgcaaaatttgtctctgagagattttccttctcttagatctttgccagactggttgggagaca |
16912327 |
T |
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| Q |
385 |
cgcctactcttcaggaattagaaattagtaagtttcctatcttaaccgagttaccagacaactttgaccaacacaaaaacttgcagaaactaagtattga |
484 |
Q |
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| T |
16912328 |
cgctatctcttcaggaattagaaattagtaagtttcctaagttaacctcgttaccagacaactttgaccaactcgaaaacttgcagaaactatgtattga |
16912427 |
T |
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| Q |
485 |
tagatgtccta |
495 |
Q |
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| T |
16912428 |
tagatgtccta |
16912438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 16836779 - 16836728
Alignment:
| Q |
217 |
ttttaccagctaatatgaacatgttaacttcccttcgtgaagtgagtatcat |
268 |
Q |
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| T |
16836779 |
ttttaccagctaatatgaacatgctaagttcccttcgtgaagtgagaatcat |
16836728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 16841890 - 16841845
Alignment:
| Q |
217 |
ttttaccagctaatatgaacatgttaacttcccttcgtgaagtgag |
262 |
Q |
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| T |
16841890 |
ttttaccagctaatatgaacatgctaagttcccttcgtgaagtgag |
16841845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 13376036 - 13375982
Alignment:
| Q |
325 |
aaaatttgtctctgacagattttccttctcttagatctttgccagactggttggg |
379 |
Q |
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| T |
13376036 |
aaaatttgtctctaactaattttccttctctaacatccttgccagactggttggg |
13375982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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