View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16999_low_3 (Length: 221)
Name: NF16999_low_3
Description: NF16999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16999_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 35498796 - 35498618
Alignment:
| Q |
1 |
catgcagttcaaagggcttgaaaattatgaatttaggagatgcccaaccaactactggtgtggctaaggttcttgagggtgatgatgatgatgctgttga |
100 |
Q |
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| T |
35498796 |
catgcagttcaaagggcttgaaaattatgaatttaggagatgcccaaccaactactggtgtggctaaggttcttgagggtgatgatgatgatgctgttga |
35498697 |
T |
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| Q |
101 |
tccacatcttgagcgcatcagaaatgaagctggtgaagatgaaagtgacgaggaggtgcctaatctatatttgatataa |
179 |
Q |
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| T |
35498696 |
tccacatcttgagcgcatcagaaatgaagctggtgaagatgaaagtgacgaggaggtgcctaatctatatttgatataa |
35498618 |
T |
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Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 7072806 - 7072971
Alignment:
| Q |
1 |
catgcagttcaaagggcttgaaaattatgaatttaggagatgcccaaccaactactggtgtggctaaggttcttgagggtgatgatgatgatgctgttga |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||| || || |
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| T |
7072806 |
catgcagttctaagggcttgaaaattatgaatttagctgatgcccaaccaactgttggtgtggccaaggtgcttgagaatgatgatgatgatgccgtcga |
7072905 |
T |
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| Q |
101 |
tccacatcttgagcgcatcagaaatgaagctggtgaagatgaaagtgacgaggaggtgcctaatct |
166 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7072906 |
tccacatctcgagcgcatcagaaatgaagctggtggagatgaaagtgacgaggaggtgcctaatct |
7072971 |
T |
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