View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1699_high_1 (Length: 414)
Name: NF1699_high_1
Description: NF1699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1699_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 402
Target Start/End: Complemental strand, 23909371 - 23909017
Alignment:
| Q |
18 |
agagttggctatggcttgtaacatgagatgcaccacattatcacttgtccaaactatagtcttaaaggaatgatctcttcaataattttatctatttagg |
117 |
Q |
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| T |
23909371 |
agagttggctatggcttgtaacatgagatgcaccacattatcacttgtccaaactatagtcttaaaggaatgatctcttcaataattttatctatttagg |
23909272 |
T |
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| Q |
118 |
agggactatatctttaggactctatctttaagactatttagcaacaaatctatagagttgaagggattatatctttaggactattgtttggacaagtcac |
217 |
Q |
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| T |
23909271 |
agggactatatcttta--------------agactatttagcaacaaatctatagagttggagggattatatctttaggactattgtttggacaa----- |
23909191 |
T |
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| Q |
218 |
aaacaatagcaaacgctagagctggttatggcttgtaacatgtggtgtaccattgtcacttgtccaaactatagttttaaaggaatgatatcttcaatag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23909190 |
-----------aacgctagagctggttatggcttgtaacatgtggtgtaccattgtcacttgtccaaactatagttttaaaggaatgatatcttcaatag |
23909102 |
T |
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| Q |
318 |
ttttatttatattgagactcgataaccaagctcaagtgactaattcaggtaagttggtttgttttttaatcttgataatgatatt |
402 |
Q |
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| T |
23909101 |
ttttatttatattgagactcgattaccaaactcaagtgactaattcaggtaagttggtttgttttttaatcttgataatgatatt |
23909017 |
T |
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