View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1699_high_2 (Length: 311)
Name: NF1699_high_2
Description: NF1699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1699_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 40769827 - 40770121
Alignment:
| Q |
1 |
tatccaaacaagaaattagtttgagagtcgttttacctgtggtaaaagaaacacttgtgttccacagtcagaaataagaacattgtaaggtatgttgttg |
100 |
Q |
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| T |
40769827 |
tatccaaacaggaaattagtttaagagttgttttacctgtggtaaaagaaacacttgtgttccacagtcagaaataagaacattgtaaggtatgttgttg |
40769926 |
T |
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| Q |
101 |
ttttgtagggagatacaagcatccgaaacaatttttgataaatcttcgagcgtgtcgccgccttcaaagacaagacctctaaccggatacttcagcaatt |
200 |
Q |
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| T |
40769927 |
ttttgtagggagatacaagcatctgaaacaatttttgataaatcttcgagcgtgtcgccgccttcaaagacaagacctctaaccggatacttcagcaatt |
40770026 |
T |
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| Q |
201 |
cagataccttgacaccaccatttgaagttgcaattttcttggtgggagccttctcaataggaaagggcatagccaaataataagcctgcatatgt |
295 |
Q |
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| T |
40770027 |
cagataccttcacaccaccatttgaagttgcaattttcttggtgggagccttctcaataggaaagggcatagccaaataataagcctgcatatgt |
40770121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 295
Target Start/End: Original strand, 21011584 - 21011847
Alignment:
| Q |
32 |
tttacctgtggtaaaagaaacacttgtgttccacagtcagaaataagaacattgtaaggtatgttgttgttttgtagggagatacaagcatccgaaacaa |
131 |
Q |
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| T |
21011584 |
tttacctgtggtaagagaaaaactcgccttccgcagtcagaaataagtacattgtaaggtatgttgttgtgttgaaggcagatacaggcttcagaaacgg |
21011683 |
T |
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| Q |
132 |
tttttgataaatcttcgagcgtgtcgccgccttcaaagacaagacctctaaccggatacttcagcaattcagataccttgacaccaccatttgaagttgc |
231 |
Q |
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| T |
21011684 |
tgtttgctaaatcatccagtgcatgaccaccctcaaagacaagacctctgacgggatagttcaacaatttagatactttcacaccaccatttaatttggc |
21011783 |
T |
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| Q |
232 |
aattttcttggtgggagccttctcaataggaaagggcatagccaaataataagcctgcatatgt |
295 |
Q |
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| T |
21011784 |
aattttcttagtagaagccttctcaattggaaaaggcagggccaaataatatgcctgaatatgt |
21011847 |
T |
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