View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1699_low_5 (Length: 254)
Name: NF1699_low_5
Description: NF1699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1699_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 21831318 - 21831237
Alignment:
| Q |
5 |
tccaagaaaatccataaccgtaaccgacctctccttcttccctcaatttcctctcttccacttctctacc-aaacacaacac |
85 |
Q |
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| T |
21831318 |
tccaaaaaaatccataactgtaaccgacctctccttcttccctcaatttcctctcttccacttctctaccaaaacacaacac |
21831237 |
T |
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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 21831125 - 21831067
Alignment:
| Q |
196 |
cgttttccattacatttcatatttgtcatagcgttttccattccatttccaaaacctcc |
254 |
Q |
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| T |
21831125 |
cgttttccattacatttcatatttgtcatagcgttttccattccatttccaaaacctcc |
21831067 |
T |
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