View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1700-Insertion-1 (Length: 469)

Name: NF1700-Insertion-1
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1700-Insertion-1
NF1700-Insertion-1
[»] chr1 (7 HSPs)
chr1 (8-272)||(47050491-47050747)
chr1 (10-272)||(16100706-16100960)
chr1 (8-272)||(14660026-14660281)
chr1 (8-280)||(17653372-17653634)
chr1 (8-272)||(14650235-14650490)
chr1 (8-272)||(29289047-29289312)
chr1 (78-272)||(19657461-19657649)
[»] chr3 (6 HSPs)
chr3 (10-272)||(19434968-19435222)
chr3 (8-280)||(28103769-28104033)
chr3 (8-280)||(28068857-28069116)
chr3 (8-272)||(6911304-6911564)
chr3 (8-280)||(28058432-28058691)
chr3 (90-233)||(11200699-11200834)
[»] chr6 (14 HSPs)
chr6 (23-272)||(27527203-27527444)
chr6 (8-272)||(25478235-25478491)
chr6 (8-272)||(33055601-33055854)
chr6 (10-270)||(28040664-28040917)
chr6 (8-280)||(22013924-22014186)
chr6 (8-139)||(33063205-33063333)
chr6 (166-272)||(33062984-33063090)
chr6 (66-272)||(27650961-27651160)
chr6 (9-161)||(27684088-27684240)
chr6 (9-161)||(27691407-27691559)
chr6 (8-155)||(6952290-6952436)
chr6 (8-101)||(17357635-17357728)
chr6 (55-271)||(15970450-15970657)
chr6 (96-269)||(17355375-17355540)
[»] chr5 (4 HSPs)
chr5 (8-280)||(5519450-5519712)
chr5 (9-270)||(42785455-42785705)
chr5 (93-272)||(15598659-15598829)
chr5 (98-155)||(27198374-27198431)
[»] chr4 (10 HSPs)
chr4 (8-272)||(4763468-4763727)
chr4 (8-219)||(27561114-27561317)
chr4 (23-154)||(11512795-11512925)
chr4 (215-280)||(27561332-27561397)
chr4 (58-129)||(8164473-8164542)
chr4 (97-153)||(5358666-5358722)
chr4 (180-272)||(11512948-11513039)
chr4 (180-270)||(5358734-5358824)
chr4 (325-371)||(40383358-40383404)
chr4 (103-219)||(54351969-54352078)
[»] chr8 (7 HSPs)
chr8 (8-272)||(18982382-18982637)
chr8 (9-270)||(4706630-4706877)
chr8 (9-154)||(28603090-28603234)
chr8 (67-155)||(26340512-26340602)
chr8 (166-268)||(26917464-26917567)
chr8 (8-132)||(15925033-15925156)
chr8 (190-280)||(15924891-15924982)
[»] chr2 (7 HSPs)
chr2 (8-280)||(44324032-44324294)
chr2 (11-219)||(45332676-45332876)
chr2 (8-269)||(31713836-31714088)
chr2 (9-161)||(39154707-39154860)
chr2 (190-271)||(2588117-2588198)
chr2 (181-280)||(808810-808909)
chr2 (215-272)||(45331962-45332019)
[»] scaffold0406 (1 HSPs)
scaffold0406 (8-272)||(3615-3868)
[»] scaffold0438 (2 HSPs)
scaffold0438 (66-270)||(7687-7884)
scaffold0438 (67-155)||(10673-10763)
[»] scaffold0713 (1 HSPs)
scaffold0713 (8-161)||(780-932)
[»] scaffold0007 (1 HSPs)
scaffold0007 (8-272)||(60505-60763)
[»] chr7 (4 HSPs)
chr7 (78-154)||(36264288-36264365)
chr7 (181-280)||(28803513-28803613)
chr7 (8-132)||(28803653-28803775)
chr7 (60-140)||(29467028-29467106)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 47050491 - 47050747
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||    
T  47050491 ggcacgattatttatttttctcaaatctaatttttaacttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaatt 47050590  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||||||        ||||| ||||||||||||||||| |||||||||||||||||     
T  47050591 cataaaactttgtaattttatcaaaccaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaa 47050682  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||| |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  47050683 aatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 47050747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 16100960 - 16100706
Alignment:
Q  10 cacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattca 109  Q
    ||||| ||||||||||||||||||||||||||||||| |  |||||||||||  ||||||||||||||||||||| |||||||| |||||||| ||||||    
T  16100960 cacgattatttatttttctcaaatctaatttttaactaacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgagaattca 16100861  T
Q  110 taaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataa 209  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| ||    
T  16100860 taaaactttgtaattttatcaaaccaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaa 16100769  T
Q  210 tatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||| |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  16100768 tatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 16100706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 14660281 - 14660026
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| ||||| ||||| |||||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||    
T  14660281 ggcacgattattttttttt-tcaaatctaatttttaacttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaatt 14660183  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||| ||| ||||||||||||||||| | ||||||||||||||        ||||| ||||||| ||||||||| |||||||||||||||||     
T  14660182 cataaaactttctaattttatcaaaccaaataagactatatcaaaatttc--------aatgtcgtcaagaagtgaaaccaaatccacaactttaaagaa 14660091  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||| |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  14660090 aatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 14660026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 17653372 - 17653634
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||||| |||||||||||||||||||| |||  |||||||||||| ||||||||||||||||  ||| |||||||| |||||||||||||    
T  17653372 ggcacgattatttattcttctcaaatctaatttttaatttacaaggctagtaaccgtataaaaatataataacctcacaatcaagtgtaccatgaaaatt 17653471  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||||||||||||||||||||| |   ||||| ||||||        ||||| |||||||||||||| || |||||||||||||||||     
T  17653472 cataaaactttgtaaatttatcaaaccaaataaga--ctatcagaatttc--------aatgtcgtcaagaggtgaaatcaaatccacaactttaaagaa 17653561  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||| |||||||||| || |||||||    
T  17653562 aatatagaaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 17653634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 14650490 - 14650235
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| ||||| ||||| |||||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||| ||||    
T  14650490 ggcacgattattttttttt-tcaaatctaatttttaacttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgataatt 14650392  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||| ||| ||||||||||||||||| | ||||||||||||||        ||||| ||||||| ||||||||| |||||||||||||||||     
T  14650391 cataaaactttttaattttatcaaaccaaataagactatatcaaaatttc--------aatgtcgtcaagaagtgaaaccaaatccacaactttaaagaa 14650300  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||| ||||||||||||||||||||||||||||||  | |||| ||||| |||||||||||||    
T  14650299 aatatataaatcgattataatgaaaaggaatcgagatagtcaaatccaaatagaatataaaaatc 14650235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 29289047 - 29289312
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgag---------gctagtaaccatataaaaatataataaattcataatcaagtatacc 98  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||         |||||||||| ||||||||||||||||||||| |||||||| ||||    
T  29289047 ggcacgattatttatttttctcaaatctaatttttaacttacaagacttacaaggctagtaaccgtataaaaatataataaattcacaatcaagtgtacc 29289146  T
Q  99 atgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaac 198  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||| |||||||||        ||||| ||||||||||||||||| |||||||||    
T  29289147 atgaaaattcataaaactttgtaattttatcaaaccaaataagactataacaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaac 29289238  T
Q  199 tttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||| || |||| ||||| |||||||| ||||    
T  29289239 tttaaagaaaatatataaattgattataatgaaaaggaatcgagataatcaaatccaaatagaatataacaatc 29289312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 78 - 272
Target Start/End: Original strand, 19657461 - 19657649
Alignment:
Q  78 aaattcataatcaagtatac-catgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaa 176  Q
    ||||||| |||||||| ||  |||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||        |  |||||||| ||    
T  19657461 aaattcacaatcaagtgtatacatgaaaattcaaaaaactttgtaaatttatcaaaccaaataagattatatcgaaat--------cccaatgttgtaaa 19657552  T
Q  177 gaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgat-taaattcaaattgaatataaaaatc 272  Q
    ||||| || ||| |||| |||| ||||||| ||||||||||||    ||||||||||||||| || || ||  |||| ||||| |||||||||||||    
T  19657553 gaggtcaacccaaatccgcaaccttaaagaaaatatagaaatcacacataatgaaaaggaattgaaataatagaaatccaaatagaatataaaaatc 19657649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 7e-84; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 19435222 - 19434968
Alignment:
Q  10 cacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattca 109  Q
    ||||| ||||||||||||||||||||||||||||||||   |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||    
T  19435222 cacgattatttatttttctcaaatctaatttttaactttcaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattca 19435123  T
Q  110 taaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataa 209  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| ||    
T  19435122 taaaactttgtaattttatcaaaccaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaa 19435031  T
Q  210 tatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||| |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  19435030 tatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 19434968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 28104033 - 28103769
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| ||||||||| ||||||||||||||||| ||||   |||||||||||  |||||||||||||||||||||  ||||||| |||||||||||||    
T  28104033 ggcacgattatttatttatctcaaatctaattttttactttcaaggctagtaactgtataaaaatataataaattcaccatcaagtgtaccatgaaaatt 28103934  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||| ||        ||||| ||||||||||||||||| |||||||||||||||||     
T  28103933 cataaaactttgtaattttatcaaaccaaataagactatatcaaaatctc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaa 28103842  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    |||||| |||| ||||||||||||||||||||||||| || |||| ||||| ||||||||||||||| |||||    
T  28103841 aatatataaattgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatcaggcttaa 28103769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 28068857 - 28069116
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| ||||||||||||||||| ||| |||||    |||||||||||||    
T  28068857 ggcacgaatatttatttttctcaaatctaatttttaatttacaaggctagtaaccgtataaaaatataataaactcacaatca---gtaccatgaaaatt 28068953  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||||| ||||||||||||||| |   ||||||||||||        ||||| ||||||| |||||| || |||||||||||||||||     
T  28068954 cataaaactttgtaaatctatcaaaccaaataaga--ctatcaaaatttc--------aatgtcgtcaagaagtgaaatcaaatccacaactttaaagaa 28069043  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||| |||||||    
T  28069044 aatatagaaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatcggacttaa 28069116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 6911304 - 6911564
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| || ||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||  |||||||| |||||||||||||    
T  6911304 ggcacgaatagttatttttctcaaatctaatttttaacttacaaggctagtaactgtataaaaatataataaattcgcaatcaagtgtaccatgaaaatt 6911403  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtg-aaaccagatccacaactttaaaga 206  Q
    |||||||||| |||| |||||||||||||||||   ||||||| |||||||||| |     || ||||||||||| |||||| |||||||||||||||||    
T  6911404 cataaaacttggtaattttatcaaaccaaataaggctatatcagaatttcaatgtc-----gtcgtcaagaggtgaaaaccaaatccacaactttaaaga 6911498  T
Q  207 taatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
     |||||| ||||||||||||||||||| |||||||||| || || | ||||| |||||||||||||    
T  6911499 aaatatataaatcgattataatgaaaaagaatcgagataatcaagtccaaatagaatataaaaatc 6911564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 28058432 - 28058691
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| ||||||||||||||||| ||| |||||    |||||||||||||    
T  28058432 ggcacgaatatttatttttctcaaatctaatttttaatttacaaggctagtaaccgtataaaaatataataaactcacaatca---gtaccatgaaaatt 28058528  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||||| ||||||||||||||| |   ||||| ||||||        ||||| ||||||| |||||| || |||||||||||||||||     
T  28058529 cataaaactttgtaaatctatcaaaccaaataaga--ctatcagaatttc--------aatgtcgtcaagaagtgaaatcaaatccacaactttaaagaa 28058618  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||| |||||||    
T  28058619 aatatagaaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatcggacttaa 28058691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 11200834 - 11200699
Alignment:
Q  90 aagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccag 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |        ||||| || ||||||||||||||     
T  11200834 aagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataaaactatatcaaaattcc--------aatgtcgtaaagaggtgaaaccaa 11200743  T
Q  190 atccacaactttaaagataatatagaaatcgattataatgaaaa 233  Q
    ||| | |||| |||||  |||||| ||||||| |||||||||||    
T  11200742 atcaataactataaaggaaatatataaatcgagtataatgaaaa 11200699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 23 - 272
Target Start/End: Complemental strand, 27527444 - 27527203
Alignment:
Q  23 ttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaa 122  Q
    ||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||    
T  27527444 ttttctcaaatctaatttttaacttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcataaaactttctaa 27527345  T
Q  123 atttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgat 222  Q
     ||||||||||||||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||    
T  27527344 ttttatcaaaccaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgat 27527253  T
Q  223 tataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  27527252 tataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 27527203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 25478235 - 25478491
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| | |||| ||||||||||| ||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||    
T  25478235 ggcacgattttttacttttctcaaatataatttttaacttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaatt 25478334  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    |||||||||| |||| ||||||||||||||||| | ||||||||||||||        ||||| ||||||||||||||||| |||||||||||||||||     
T  25478335 cataaaacttcgtaattttatcaaaccaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaa 25478426  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||| |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  25478427 aatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 25478491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 33055854 - 33055601
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||| ||||   |||||||||||||||||||| ||   ||| |||||||||||||    
T  33055854 ggcacgattatttatttttctcaaatctaatttttaacttacaaggctaataactgaataaaaatataataaattcacaa---agtgtaccatgaaaatt 33055758  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||||||        ||||||||||||||||||||||| |||||||||||||||||     
T  33055757 cataaaactttgtaattttatcaaaccaaataagactatatcaaaatttc--------aatgttgtcaagaggtgaaaccaaatccacaactttaaagaa 33055666  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||| |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  33055665 aatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 33055601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 10 - 270
Target Start/End: Complemental strand, 28040917 - 28040664
Alignment:
Q  10 cacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaa-tataataaattcataatcaagtataccatgaaaattc 108  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||||||||  |||||||| ||||||||||||| |||||||| ||||||||||||||    
T  28040917 cacgattatttatttttctcaaatctaatttttaacttacaaggctagtaactgtataaaaaatataataaattcacaatcaagtgtaccatgaaaattc 28040818  T
Q  109 ataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagata 208  Q
    |||||||||||||| |||||||||| |||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| |    
T  28040817 ataaaactttgtaattttatcaaactaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaa 28040726  T
Q  209 atatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaa 270  Q
    ||||| |||||||||||||||||||||||||||||| || |||| |||||  ||||||||||    
T  28040725 atatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatataatataaaaa 28040664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 22014186 - 22013924
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||||| |||||||||||||||||||| |||  || ||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||    
T  22014186 ggcacgattatttattcttctcaaatctaatttttaatttacaagactagtaaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaatt 22014087  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||||||||||||||||||||| |   ||||| ||||||        ||||| |||||||||||||| || |||||||||||||||||     
T  22014086 cataaaactttgtaaatttatcaaaccaaataaga--ctatcagaatttc--------aatgtcgtcaagaggtgaaatcaaatccacaactttaaagaa 22013997  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    ||||||||||||||||||||||||||| ||||||||| || |||| ||||| |||||||||| || |||||||    
T  22013996 aatatagaaatcgattataatgaaaagaaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 22013924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 33063333 - 33063205
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |   |||| |||||||||||||    
T  33063333 ggcacgattatttatttttctcaaatctaatttttaacttacaaggctagtaactgtataaaaatataataaattcaca---aagtgtaccatgaaaatt 33063237  T
Q  108 cataaaactttgtaaatttatcaaaccaaata 139  Q
    ||||||||||||||| ||||||||||||||||    
T  33063236 cataaaactttgtaattttatcaaaccaaata 33063205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 166 - 272
Target Start/End: Complemental strand, 33063090 - 33062984
Alignment:
Q  166 aatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatat 265  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| || |||| ||||| ||||||    
T  33063090 aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatat 33062991  T
Q  266 aaaaatc 272  Q
    |||||||    
T  33062990 aaaaatc 33062984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 66 - 272
Target Start/End: Complemental strand, 27651160 - 27650961
Alignment:
Q  66 taaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgac 163  Q
    ||||||||||||||||||| |||||||  ||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||| |||||       
T  27651160 taaaaatataataaattcacaatcaagagtataccatgaaaattcagaaaattttgtaaatttatcaaatcaaataatactatatcaaaatatcaat--- 27651064  T
Q  164 aaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaat 263  Q
          ||   |||||||||| ||| ||| ||||||||||||  ||||||||||||   ||||||||||||||||| | || || |||| ||||| || |    
T  27651063 ------ttcgtaagaggtgaatccaaatcaacaactttaaaggaaatatagaaatcatgtataatgaaaaggaatccaaataatcaaatccaaatagact 27650970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 27684240 - 27684088
Alignment:
Q  9 gcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattc 108  Q
    |||||| |||||||||||||||||||||||||||||||||  | ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||    
T  27684240 gcacgattatttatttttctcaaatctaatttttaacttacaaagctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattc 27684141  T
Q  109 ataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatg 161  Q
      ||||| | |||| || |||||||||||||| | ||||| |||||| |||||    
T  27684140 ggaaaacatcgtaacttaatcaaaccaaataaaagtatattaaaattccaatg 27684088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 27691559 - 27691407
Alignment:
Q  9 gcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattc 108  Q
    |||||| |||||||||||||||||||||||||||||||||  | ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||    
T  27691559 gcacgattatttatttttctcaaatctaatttttaacttacaaagctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattc 27691460  T
Q  109 ataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatg 161  Q
      ||||| |  ||| || |||||||||||||| | ||||| |||||| |||||    
T  27691459 ggaaaacatcttaacttaatcaaaccaaataaaagtatattaaaattccaatg 27691407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 6952436 - 6952290
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||  |||||||||||| |||||| || |||  | | || ||||| ||||||||| ||||||| ||| ||| |||| |||||||||||||    
T  6952436 ggcacgattatttccttttctcaaatcaaatttt-aatttacaaagttactaaccgtataaaaatgtaataaactcacaataaagtgtaccatgaaaatt 6952338  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatt 155  Q
    |  ||| |||||| ||||||||||||||||||| | ||||||||||||    
T  6952337 cgaaaatctttgtgaatttatcaaaccaaataagactatatcaaaatt 6952290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 17357728 - 17357635
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatg 101  Q
    ||||||| |||||||||||||||||||||||||||||||||  | ||||||| |  ||||||||||| ||||| ||| |||| |||||||||||    
T  17357728 ggcacgattatttatttttctcaaatctaatttttaacttacaaagctagtacctgtataaaaatatgataaactcacaatcgagtataccatg 17357635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 271
Target Start/End: Original strand, 15970450 - 15970657
Alignment:
Q  55 tagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaat 154  Q
    ||||| || |||||||||||||| || |||||||| ||| |||| |||||||||  |||||||||||| ||||||||||||||||| | || ||||||||    
T  15970450 tagtacccgtataaaaatataatcaactcataatctagtgtaccttgaaaattcggaaaactttgtaactttatcaaaccaaataagactacatcaaaat 15970549  T
Q  155 ttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattc 254  Q
      ||||| |        ||  | ||||||| ||| ||||||||||||||  | ||||||||||||    |||||||||||| ||||| || || |||| |    
T  15970550 cgcaatgtc--------gtacaaaggtgaacccaaatccacaactttaattagaatatagaaatcatccataatgaaaagg-atcgaaataatcaaatcc 15970640  T
Q  255 aaattgaatataaaaat 271  Q
    |||| ||||||||||||    
T  15970641 aaatcgaatataaaaat 15970657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 269
Target Start/End: Complemental strand, 17355540 - 17355375
Alignment:
Q  96 accatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccac 195  Q
    |||||||||||||  ||||| | |||| ||||||||||||||||| | ||||| |||||| ||||| |        || | || ||||| ||| ||||||    
T  17355540 accatgaaaattcggaaaacatcgtaactttatcaaaccaaataaaagtatattaaaattccaatgtc--------gtaaggaagtgaacccaaatccac 17355449  T
Q  196 aactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaa 269  Q
    ||||||||||| ||||||| |||||  ||||||| |||||||||||| || || |||| ||||| ||||||||||    
T  17355448 aactttaaagaaaatatag-aatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaatataaaa 17355375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 5519450 - 5519712
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||    
T  5519450 ggcacgattatttatttttctcaaatctaatttttaatttacaaggctagtaaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaatt 5519549  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||||||||||||||||||||| |   ||||| ||||||        |||||  ||||||||||||| || |||||||||||||||||     
T  5519550 cataaaactttgtaaatttatcaaaccaaataaga--ctatcagaatttc--------aatgtcttcaagaggtgaaatcaaatccacaactttaaagaa 5519639  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||| |||||||    
T  5519640 aatatagaaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatcggacttaa 5519712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 42785705 - 42785455
Alignment:
Q  9 gcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattc 108  Q
    |||||| || ||| |||||||||||||||||||||| |||  |||||||||||| ||||||||||||| || | || |||||||| ||||||||||||||    
T  42785705 gcacgattagttacttttctcaaatctaatttttaatttacaaggctagtaaccgtataaaaatataacaact-cacaatcaagtgtaccatgaaaattc 42785607  T
Q  109 ataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagata 208  Q
    ||||||||||||||||||||||||||||| || |   ||||  ||||||        ||||| |||||||||||||| || ||||||||||||||||| |    
T  42785606 ataaaactttgtaaatttatcaaaccaaacaaga--ctatcggaatttc--------aatgtcgtcaagaggtgaaatcaaatccacaactttaaagaaa 42785517  T
Q  209 atatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaa 270  Q
    ||||||||||||||||||||||||| |||||||||| || |||| |||||  ||||||||||    
T  42785516 atatagaaatcgattataatgaaaatgaatcgagataatcaaatccaaataaaatataaaaa 42785455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 272
Target Start/End: Complemental strand, 15598829 - 15598659
Alignment:
Q  93 tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatc 192  Q
    |||| |||||||||||||||||| || |||||||||||||| |||||| | ||||||||||| |||||| |        || |||||||||| ||| |||    
T  15598829 tataacatgaaaattcataaaaccttttaaatttatcaaacgaaataagactatatcaaaatctcaatgtc--------gtaaagaggtgaatccaaatc 15598738  T
Q  193 cacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||||||||||| |||||||||||||  ||||||| ||||||||||| || || |||| ||||| |||||||||||||    
T  15598737 cacaactttaaagaaaatatagaaatcgcgtataatg-aaaggaatcgaaataatcaaatccaaatagaatataaaaatc 15598659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 27198374 - 27198431
Alignment:
Q  98 catgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatt 155  Q
    |||||||||||| |||||||||||||||||| ||||||||||  | ||||||||||||    
T  27198374 catgaaaattcagaaaactttgtaaatttattaaaccaaatatgactatatcaaaatt 27198431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 4763468 - 4763727
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| || ||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||  |||||||| |||||||||||||    
T  4763468 ggcacgaatagttatttttctcaaatctaatttttaacttacaaggctagtaactgtataaaaatataataaattcgcaatcaagtgtaccatgaaaatt 4763567  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    |||||||||| |||| |||||||||||||||||   ||||||| |||||||||| |     || ||||||||||||||||| |||||||||||||||||     
T  4763568 cataaaacttggtaattttatcaaaccaaataaggctatatcagaatttcaatgtc-----gtcgtcaagaggtgaaaccaaatccacaactttaaagaa 4763662  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||| |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  4763663 aatatataaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 4763727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 219
Target Start/End: Original strand, 27561114 - 27561317
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||||||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| |||||||||||||    
T  27561114 ggcacgattatttatttttctcaaatctaatttttaacttacaaggctagtaacggtataaaaatataataaattcacaatcaagtgtaccatgaaaatt 27561213  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||||||        ||||| ||||||||||||||||| |||||||||||||||||     
T  27561214 cataaaactttgtaattttatcaaaccaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaa 27561305  T
Q  208 aatatagaaatc 219  Q
    |||||| |||||    
T  27561306 aatatataaatc 27561317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 11512795 - 11512925
Alignment:
Q  23 ttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaa 122  Q
    ||||||||||||||||||| || ||| || | ||| |  | ||||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||    
T  11512795 ttttctcaaatctaatttt-aatttacgaagatagcacgcgtataaaaatataataaactcacaatcaagtataccatgaaaattcggaaaactttgtaa 11512893  T
Q  123 atttatcaaaccaaataatattatatcaaaat 154  Q
     ||||||||||||||||| | ||| |||||||    
T  11512894 ctttatcaaaccaaataagactatgtcaaaat 11512925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 27561332 - 27561397
Alignment:
Q  215 aaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    |||||||||||||||||||||||||||||| || |||| ||||| |||||||||| || |||||||    
T  27561332 aaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 27561397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 8164473 - 8164542
Alignment:
Q  58 taaccatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatc 129  Q
    ||||| ||||||||||||||||||| | |||||||| ||||||||||||||| |||  ||||||| ||||||    
T  8164473 taaccgtataaaaatataataaatttacaatcaagtgtaccatgaaaattcacaaa--tttgtaattttatc 8164542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 5358666 - 5358722
Alignment:
Q  97 ccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaa 153  Q
    ||||||||| |||||||||||| ||||||||| |||||||| || | ||||||||||    
T  5358666 ccatgaaaactcataaaactttataaatttattaaaccaaacaagactatatcaaaa 5358722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 272
Target Start/End: Original strand, 11512948 - 11513039
Alignment:
Q  180 gtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    ||||| ||| ||||||||||||||||| |||| | |||||    |||||||||||||||||| || || |||| ||||| |||||||||||||    
T  11512948 gtgaacccaaatccacaactttaaagaaaataaa-aaatcatgcataatgaaaaggaatcgaaataatcaaatccaaatagaatataaaaatc 11513039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 270
Target Start/End: Original strand, 5358734 - 5358824
Alignment:
Q  180 gtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaa 270  Q
    ||||||||| ||| || |||||||||  ||||||||||| || |||||||| |||||||  | || || |||| ||||| |||||||||||    
T  5358734 gtgaaaccaaatctaccactttaaagcaaatatagaaatagagtataatgagaaggaatgaaaataatcaaatccaaatagaatataaaaa 5358824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 40383404 - 40383358
Alignment:
Q  325 ttgaaagccaaatttaatatctcatgttgcaaaatatctgtcatgtt 371  Q
    |||||||||||||| |||||||||| ||| ||||||||| |||||||    
T  40383404 ttgaaagccaaattaaatatctcatattgaaaaatatctctcatgtt 40383358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 219
Target Start/End: Original strand, 54351969 - 54352078
Alignment:
Q  103 aaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaacttta 202  Q
    ||||||| |||||| ||||||||||| ||||||||||| |  ||||||||||| ||||  |  ||       || ||||||||||| |||||||| ||||    
T  54351969 aaattcagaaaactgtgtaaatttattaaaccaaataagaccatatcaaaattccaatatcgtaa-------aaaaggtgaaaccaaatccacaatttta 54352061  T
Q  203 aagataatatagaaatc 219  Q
    |||||| ||||||||||    
T  54352062 aagatagtatagaaatc 54352078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 18982637 - 18982382
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| ||||||||||||||||||| |||||||||||||  ||||||||||| ||||||||||||||||| |||| |||||||| ||||||| |||||    
T  18982637 ggcacgattatttatttttctcaaatcgaatttttaacttacaaggctagtaactatataaaaatataataagttcacaatcaagtgtaccatggaaatt 18982538  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||| ||||||||||||||||| | ||| ||||||||||        ||||| ||||||||||||||||  |||||||||||||||||     
T  18982537 cataaaactttgtaattttatcaaaccaaataagactatgtcaaaatttc--------aatgtcgtcaagaggtgaaacccaatccacaactttaaagaa 18982446  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||| |||||||||||||||||||||||||||||| || ||| || ||| |||||||||||||    
T  18982445 aatatataaatcgattataatgaaaaggaatcgagataatcaaa-tccaatagaatataaaaatc 18982382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 9 - 270
Target Start/End: Original strand, 4706630 - 4706877
Alignment:
Q  9 gcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattc 108  Q
    |||||| || ||| |||||||||||||||||||||| |||  |||||||||||| ||||||||||||| || | || |||||||| ||||||||||||||    
T  4706630 gcacgattagttacttttctcaaatctaatttttaatttacaaggctagtaaccgtataaaaatataacaact-cacaatcaagtgtaccatgaaaattc 4706728  T
Q  109 ataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagata 208  Q
    ||||||||||||||||||||||||||||| || | |||     ||||||        |||||||||||||||||||| || ||||||||||||||||| |    
T  4706729 ataaaactttgtaaatttatcaaaccaaacaagactat-----aatttc--------aatgttgtcaagaggtgaaatcaaatccacaactttaaagaaa 4706815  T
Q  209 atatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaa 270  Q
    |||||||||||||||||||||||||||||||||||| || |||| |||||  ||||||||||    
T  4706816 atatagaaatcgattataatgaaaaggaatcgagataatcaaatccaaataaaatataaaaa 4706877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 28603090 - 28603234
Alignment:
Q  9 gcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattc 108  Q
    |||||| || ||| ||||||||||||||||||| || |||  | |||| || || ||||||||||| ||||| |||  ||||| | ||||||||||||||    
T  28603090 gcacgattagttacttttctcaaatctaatttt-aatttacaaagctaatacccgtataaaaatatgataaactcacgatcaaatgtaccatgaaaattc 28603188  T
Q  109 ataaaactttgtaaatttatcaaaccaaataatattatatcaaaat 154  Q
    | |||||||||||| ||||||||||||||||| | |||||||||||    
T  28603189 agaaaactttgtaactttatcaaaccaaataaaagtatatcaaaat 28603234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 26340512 - 26340602
Alignment:
Q  67 aaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatt 155  Q
    |||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||    
T  26340512 aaaaatataataaactcacaatcaagagtataccatgaaaattcagaaaactttgtaaatttatcaaatcaaataagaatatatcaaaatt 26340602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 26917464 - 26917567
Alignment:
Q  166 aatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaata 264  Q
    ||||| || |||| ||||| ||| ||||||||||||||||| |||||||||||||  ||||||| |||||||||||| || || |||| ||||| |||||    
T  26917464 aatgtcgtaaagaagtgaacccaaatccacaactttaaagaaaatatagaaatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaata 26917563  T
Q  265 taaa 268  Q
    ||||    
T  26917564 taaa 26917567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 15925156 - 15925033
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||| |||||||||||| |||||| || |||  | | || ||||| ||||||||||||||||| ||  || ||||| |||  ||||||||    
T  15925156 ggcacgattatttacttttctcaaatcaaatttt-aatttacaaagttattaaccgtataaaaatataataaactctcaaacaagtgtactgtgaaaatt 15925058  T
Q  108 cataaaactttgtaaatttatcaaa 132  Q
    || ||| |||| |||||||||||||    
T  15925057 cagaaatctttataaatttatcaaa 15925033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 15924982 - 15924891
Alignment:
Q  190 atccacaactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    |||||||| |||||||| |||||||||||||  |||| || |||||||||||| || || |||| ||||| |||| |||||||| |||||||    
T  15924982 atccacaattttaaagaaaatatagaaatcgcatatagtgaaaaaggaatcgaaataatcaaatccaaatagaatgtaaaaatcggacttaa 15924891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 280
Target Start/End: Complemental strand, 44324294 - 44324032
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||||| |||||||||||||||||||| |||  || ||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||    
T  44324294 ggcacgattatttattcttctcaaatctaatttttaatttacaagactagtaaccgtataaaaatataataaactcacaatcaagtgtaccatgaaaatt 44324195  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    ||||||||||||||||||||||||||||||||| |   ||||| ||||||        ||||| |||||||||||||| || |||||||||||||||||     
T  44324194 cataaaactttgtaaatttatcaaaccaaataaga--ctatcagaatttc--------aatgtcgtcaagaggtgaaatcaaatccacaactttaaagaa 44324105  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    ||||||||||||||||||||||||||| ||||||||| || |||| ||||| |||||||||| || |||||||    
T  44324104 aatatagaaatcgattataatgaaaagaaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 44324032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 11 - 219
Target Start/End: Complemental strand, 45332876 - 45332676
Alignment:
Q  11 acgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattcat 110  Q
    |||| |||||| ||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  45332876 acgattatttacttttctcaaatctaatttttaacttacaaggctagtaactgtataaaaatataataaattcacaatcaagtgtaccatgaaaattcat 45332777  T
Q  111 aaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagataat 210  Q
    |||||||||||| ||||||||||||||||| | ||||||||||||||        ||||| ||||||||||||||||| ||||||||||||||||| |||    
T  45332776 aaaactttgtaattttatcaaaccaaataagactatatcaaaatttc--------aatgtcgtcaagaggtgaaaccaaatccacaactttaaagaaaat 45332685  T
Q  211 atagaaatc 219  Q
    ||| |||||    
T  45332684 atataaatc 45332676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 31714088 - 31713836
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||||||||||||||||||||||||||||||  | ||||||| || ||||||||||| ||||| ||| |||| ||| | |||||||||||    
T  31714088 ggcacgattatttatttttctcaaatctaatttttaacttacaaagctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaatt 31713989  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    |  ||||| | |||| || |||||||||||||| | ||||| |||||| |        |||||||| | || ||||| ||| ||||||||| |||||||     
T  31713988 cggaaaacatcgtaacttaatcaaaccaaataaaagtatattaaaattcc--------aatgttgtaaggaagtgaacccaaatccacaac-ttaaagaa 31713898  T
Q  208 aatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaa 269  Q
    ||||||| |||||  ||||||| |||||||||||| || || |||| ||||| ||||||||||    
T  31713897 aatatag-aatcgcgtataatgaaaaaggaatcgaaataatcaaatccaaatagaatataaaa 31713836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 161
Target Start/End: Original strand, 39154707 - 39154860
Alignment:
Q  9 gcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaattc 108  Q
    |||||| |||||||||||||||||||||||||||||||||  | ||||||| || ||||||||||| ||||| ||| |||| ||| | ||||||||||||    
T  39154707 gcacgattatttatttttctcaaatctaatttttaacttacaaagctagtacccgtataaaaatatgataaactcacaatcgagtgtgccatgaaaattc 39154806  T
Q  109 -ataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatg 161  Q
       ||||| | |||| || |||||||||||||| | ||||| |||||| |||||    
T  39154807 ggaaaaacatcgtaacttaatcaaaccaaataaaagtatattaaaattccaatg 39154860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 190 - 271
Target Start/End: Complemental strand, 2588198 - 2588117
Alignment:
Q  190 atccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaat 271  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| || |||| ||||| ||||||||||||    
T  2588198 atccacaactttaaagaaaatatataaatcgattataatgaaaaggaatcaagataatcaaatccaaatagaatataaaaat 2588117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 808810 - 808909
Alignment:
Q  181 tgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatcagacttaa 280  Q
    |||| ||| |||||||| |||||||| |||||||||| ||  ||||||||||| |||||||||| || |||| ||||| |||||||||| || |||||||    
T  808810 tgaacccaaatccacaattttaaagaaaatatagaaaccgcgtataatgaaaaagaatcgagataatcaaatccaaatagaatataaaagtcggacttaa 808909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 45332019 - 45331962
Alignment:
Q  215 aaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||||||||||||||||||||||||||| || |||| ||||| |||||||||||||    
T  45332019 aaatcgattataatgaaaaggaatcgagataatcaaatccaaatagaatataaaaatc 45331962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 3868 - 3615
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| | |||| ||||||||||| |||||||||| |||  |||||||||||  ||||||||||||||||||||| |||||| | |||||||||||||    
T  3868 ggcacgattttttacttttctcaaatataatttttaatttacaaggctagtaactgtataaaaatataataaattcacaatcaaatgtaccatgaaaatt 3769  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaagaggtgaaaccagatccacaactttaaagat 207  Q
    |||||||||| |||| ||||||||||||||||| | |||    |||||||        ||||| ||||||||||||||| | |||||||||||||||||     
T  3768 cataaaacttcgtaattttatcaaaccaaataagactat---caaatttc--------aatgtcgtcaagaggtgaaactaaatccacaactttaaagaa 3680  T
Q  208 aatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    |||||| |||||||||||||||||||||||||||||| || ||||||| || |||||||||||||    
T  3679 aatatataaatcgattataatgaaaaggaatcgagataatcaaattcacatagaatataaaaatc 3615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 66 - 270
Target Start/End: Original strand, 7687 - 7884
Alignment:
Q  66 taaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgac 163  Q
    ||||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||||||| |||||      
T  7687 taaaaatataataaactcacaatcaagaatataccatgaaaattcagaaaactttgtaaatttatcaaatcaaataagaatatatcaaaattccaatg-- 7784  T
Q  164 aaaatgttgtcaagaggtgaaaccagatccacaactttaaagataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaat 263  Q
           ||  |||||||||| ||| ||| ||||||||||||| ||||||||||  |  ||| ||||||| ||||||| || || |||| ||||| ||||    
T  7785 -------tggtaagaggtgaatccaaatcaacaactttaaagaaaatatagaaactgggtatgatgaaaatgaatcgaaataatcaaatccaaatagaat 7877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 155
Target Start/End: Original strand, 10673 - 10763
Alignment:
Q  67 aaaaatataataaattcataatcaag--tataccatgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaatt 155  Q
    |||||||||||||| ||| |||||||  ||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||    
T  10673 aaaaatataataaactcacaatcaagagtataccatgaaaattcagaaaactttgtaaatttatcaaatcaaataagaatatatcaaaatt 10763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 932 - 780
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||||||||||||||||||||||||||||||  | ||||||| || ||||||||||| || || ||| |||| ||| | |||||||||||    
T  932 ggcacgattatttatttttctcaaatctaatttttaacttacaaagctagtacccgtataaaaatatgat-aactcacaatcgagtgtgccatgaaaatt 834  T
Q  108 cataaaactttgtaaatttatcaaaccaaataatattatatcaaaatttcaatg 161  Q
       ||||| | |||| ||||||||||||||||| | ||||| |||||| |||||    
T  833 aggaaaacatcgtaactttatcaaaccaaataaaagtatattaaaattccaatg 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 272
Target Start/End: Complemental strand, 60763 - 60505
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| || ||| |||||||||||||||| || || |||  | ||||||| || ||||||||||| ||||| |||  ||||||| |  ||||||||||    
T  60763 ggcacgattaattacttttctcaaatctaatatt-aatttacaaagctagtacccgtataaaaatattataaactcacgatcaagtgtctcatgaaaatt 60665  T
Q  108 cataaaa--ctttgtaaatttatcaaaccaaataatattatatcaaaatttcaatgacaaaatgttgtcaaga-ggtgaaaccagatccacaactttaaa 204  Q
    | |||||  ||| |||  ||||||||||||||||| | |||||||||||       ||||| ||| || || | |||||| ||| |||| ||||||||||    
T  60664 cgtaaaaaacttggtagttttatcaaaccaaataagactatatcaaaat-------acaaa-tgtcgtaaaaaaggtgaatccaaatccgcaactttaaa 60573  T
Q  205 gataatatagaaatcgattataatgaaaaggaatcgagatgattaaattcaaattgaatataaaaatc 272  Q
    || ||||| |||||| |  |||||||||||||||||| || || |||| ||||| |||||||| ||||    
T  60572 gaaaatatcgaaatcaagcataatgaaaaggaatcgaaataatcaaatccaaatagaatataacaatc 60505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 36264288 - 36264365
Alignment:
Q  78 aaattcataatcaagtatac-catgaaaattcataaaactttgtaaatttatcaaaccaaataatattatatcaaaat 154  Q
    ||||||| |||||||| ||  |||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||    
T  36264288 aaattcacaatcaagtgtatacatgaaaattcagaaaactttataaatttatcaaaccaaataagattatatcgaaat 36264365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 280
Target Start/End: Complemental strand, 28803613 - 28803513
Alignment:
Q  181 tgaaaccagatccacaactttaaagataatatagaaatcgattataatg-aaaaggaatcgagatgattaaattcaaattgaatataaaaatcagactta 279  Q
    |||| ||| |||||||| |||||||| |||||||||||||  ||||||| |||||||||||| || || |||| ||||| || |||||||||  ||||||    
T  28803613 tgaacccaaatccacaattttaaagagaatatagaaatcgcatataatgaaaaaggaatcgaaataatcaaatccaaatagagtataaaaattggactta 28803514  T
Q  280 a 280  Q
    |    
T  28803513 a 28803513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 132
Target Start/End: Complemental strand, 28803775 - 28803653
Alignment:
Q  8 ggcacgactatttatttttctcaaatctaatttttaacttatgaggctagtaaccatataaaaatataataaattcataatcaagtataccatgaaaatt 107  Q
    ||||||| |||||| |||||||||||| |||||| |  |||  | | || ||| | ||||||||||||||||| ||  || |||||  ||| ||||||||    
T  28803775 ggcacgattatttacttttctcaaatcaaattttaa--ttacaaagttattaaacgtataaaaatataataaactcccaaacaagtgcaccgtgaaaatt 28803678  T
Q  108 cataaaactttgtaaatttatcaaa 132  Q
    || ||| |||| |||||||||||||    
T  28803677 cagaaatctttataaatttatcaaa 28803653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 29467028 - 29467106
Alignment:
Q  60 accatataaaaatataataaattcataatcaagtataccatgaaaattcataaaactttgtaaatttatcaaaccaaataa 140  Q
    ||||| ||||||| ||||||||  | |||||||| ||||||| |||||||||||  ||| |||||||||| || |||||||    
T  29467028 accatgtaaaaatttaataaatcaacaatcaagtgtaccatggaaattcataaa--tttataaatttatccaatcaaataa 29467106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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