View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700-Insertion-2 (Length: 259)
Name: NF1700-Insertion-2
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700-Insertion-2 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 51068004 - 51068255
Alignment:
| Q |
8 |
gttttctctcttgttagacaaaacacatgttatctacctatttctatgttatatattacaagttgtaacacctccctctagatagaatttggatatccaa |
107 |
Q |
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| T |
51068004 |
gttttctctcttgttagacaaaacacatgttatctacctatttctatgttatatattacaagttgtaacacctccctctagatagaatttggatatccaa |
51068103 |
T |
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| Q |
108 |
catgccaagcttgtaatgcatattagagagccttgctatcttatttaatacattccttttttactcagcagtattagtgagctcaagattatttaacaaa |
207 |
Q |
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| T |
51068104 |
catgccaagcttgtaatgcatattagagagccttgctatcttatttaatacattccttttttattcagcagtattagtgagctcaagattatttaacaaa |
51068203 |
T |
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| Q |
208 |
tagagatataaaccagtatgcctcacagagcaagttatgtactctgcttata |
259 |
Q |
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| T |
51068204 |
tagagatataaaccagtatgcctcacagagcaagttatgcactctgcttata |
51068255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 42334832 - 42334968
Alignment:
| Q |
65 |
acaagttgtaacacctccctctagatagaatttggatatccaacatgccaagcttgtaatgcatattagagagccttgctatcttatttaatacattcct |
164 |
Q |
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||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| || |
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| T |
42334832 |
acaagttgtaacacctccctcaagatagaatgtggatatccaacatgcctagcttgtaatgcatattagaga----tcctatcttatttaatacattact |
42334927 |
T |
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| Q |
165 |
ttttt-actcagcagtattagtgagctcaagattatttaac |
204 |
Q |
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| T |
42334928 |
tttttgattcagcagtattagtgagctcaagattatttaac |
42334968 |
T |
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