View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1700-Insertion-4 (Length: 323)

Name: NF1700-Insertion-4
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1700-Insertion-4
NF1700-Insertion-4
[»] chr5 (1 HSPs)
chr5 (8-323)||(10814702-10815014)


Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 323
Target Start/End: Complemental strand, 10815014 - 10814702
Alignment:
Q  8 gaatttgttttcaccacttccttaaaaagttcaagaagaactcaaaagtttgaaccaactaagtcaccgtcctaaatccaccactgcctctaatatgatc 107  Q
    ||||||||||||||||||  |||||||||||||||||   ||||||||||||||||| |||| |||| ||||||||||||||| ||||||||||||||||    
T  10815014 gaatttgttttcaccactggcttaaaaagttcaagaa---ctcaaaagtttgaaccacctaaatcacggtcctaaatccaccagtgcctctaatatgatc 10814918  T
Q  108 ttgatacaatgatacacctcataaactaatatgctacatcaaatttcatttgtgtggttattagttgcaatgatgtaggttttcttaataacattaagca 207  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10814917 atgatacaatgacacacctcataaactaatatgctacatcaaatttcatttgtgtggttattagttgcaatgatgtaggttttcttaataacattaagca 10814818  T
Q  208 aaatgttgataaatttaccagctactatctttgaaccattttttaaaaggtccatatcaatttgtagacaaattctttggtgccatataccattggtctt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10814817 aaatgttgataaatttaccagctactatctttgaaccattttttaaaaggtccatatcaatttgtagacaaattctttggtgccatataccattgctctt 10814718  T
Q  308 atcatatattgatata 323  Q
    ||||||||||||||||    
T  10814717 atcatatattgatata 10814702  T

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