View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1700-Insertion-6 (Length: 206)
Name: NF1700-Insertion-6
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 204
Target Start/End: Original strand, 36877255 - 36877451
Alignment:
| Q |
8 |
aatccgtgatcaagaaattaggtgttcctgatgaagacacctcaagagcttttcttccacacataatctccaaaacaacgacaccaaagctatagacatc |
107 |
Q |
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| T |
36877255 |
aatccgtgatcaagaaattaggtgttcctgatgaagacacctcaagagcttttcttccacacataatctccaaaacaaccacaccaaagctatagacatc |
36877354 |
T |
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| Q |
108 |
gctcttcccggttagctgaccatagagtgcatattctggggcaagatatccatatgttccagctactcttgtatttagctgcgacctactttcactg |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36877355 |
gctcttcccggttagctgaccatagagtgcatattctggggcaagatatccatatgttccagctactcttgtatttagctgcgacctactttcactg |
36877451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 188
Target Start/End: Original strand, 36870665 - 36870845
Alignment:
| Q |
8 |
aatccgtgatcaagaaattaggtgttcctgatgaagacacctcaagagcttttcttccacacataatctccaaaacaacgacaccaaagctatagacatc |
107 |
Q |
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|||||||||||||||||||||| ||| || ||||||| || |||||| ||| |||||||||| ||||| | |||||| || ||||| ||||||||||| |
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| T |
36870665 |
aatccgtgatcaagaaattaggctctccagacgaagacaactgaagagccttttttccacacattatctcaagaacaaccacgccaaaactatagacatc |
36870764 |
T |
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| Q |
108 |
gctcttcccggttagctgaccatagagtgcatattctggggcaagatatccatatgttccagctactcttgtatttagctg |
188 |
Q |
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|||||| |||||| ||||||||| |||||||||||||| || ||||||||| ||||| |||||||| |||||| |||| |
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| T |
36870765 |
actcttctcggttaactgaccataaagtgcatattctggagctagatatccacgagttccggctactctagtatttggctg |
36870845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 718694 - 718584
Alignment:
| Q |
33 |
tcctgatgaagacacctcaagagcttttcttccacacataatctccaaaacaacgacaccaaagctatagacatcgctcttcccggttagctgaccatag |
132 |
Q |
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||||||||| |||| |||||||| || || |||||||| |||||||||||||| ||||||||||| || ||||| |||||| | || |||||||||||| |
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| T |
718694 |
tcctgatgaggacaaatcaagagccttcctaccacacattatctccaaaacaaccacaccaaagctgtatacatcactcttctcagtcagctgaccatag |
718595 |
T |
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| Q |
133 |
agtgcatattc |
143 |
Q |
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|| |||||||| |
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| T |
718594 |
agcgcatattc |
718584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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