View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1700-Insertion-7 (Length: 196)
Name: NF1700-Insertion-7
Description: NF1700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1700-Insertion-7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 7 - 196
Target Start/End: Original strand, 17653570 - 17653759
Alignment:
| Q |
7 |
aacgactacaccaaagagccacaaaacacacatgagatacttttaggatccacaataaccctctattagaaaagaatttgatgagtaggaatcctatctt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17653570 |
aacgactacaccaaagagccacaaaacacacatgagatacttctaggatccacaataaccctctattagaaaagaatttgatgagtaggaatcctatcct |
17653669 |
T |
|
| Q |
107 |
aaagttacttctaacagaagatgatgaccttgggataggggtcatcaactcttctataccttagtcaaaatttgggcttcctcctcagta |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17653670 |
gaagttacttctaacagaagatgatgaccttaggataggggtcatcaactcttctataccttagtcaaaatttgggcttcctcctcagta |
17653759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University