View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17000_high_1 (Length: 1160)
Name: NF17000_high_1
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_high_1 |
 | |
|
| [»] scaffold0291 (4 HSPs) |
| | |
|
| [»] scaffold0305 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 1138; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 1138; E-Value: 0
Query Start/End: Original strand, 1 - 1146
Target Start/End: Original strand, 7915072 - 7916217
Alignment:
| Q |
1 |
cactgcatcatgtgaccttgatgttggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915072 |
cactgcatcatgtgaccttgatgttggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtga |
7915171 |
T |
|
| Q |
101 |
ggtggttgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915172 |
ggtggttgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatca |
7915271 |
T |
|
| Q |
201 |
aaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915272 |
aaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacat |
7915371 |
T |
|
| Q |
301 |
cacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915372 |
cacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagct |
7915471 |
T |
|
| Q |
401 |
ctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagtaaag |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915472 |
ctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgtgaaaggttgtaaataatgcatctttgggagtaaag |
7915571 |
T |
|
| Q |
501 |
gttggccataaatatgaaacatgttagctagtgagagtgcagtgaacctcactgtgagttgaagctcacccattttcttaactccatgttggtgtaaaac |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915572 |
gttggccataaatatgaaacatgttagctagtgagagtgcagtgaacctcactgtgagttgaagctcacccattttcttaactccatgttggtgtaaaac |
7915671 |
T |
|
| Q |
601 |
aagaagtggataagaattggtgtaaattttattggcttcaagtgttgatagcctaatccttacctttccaattcttgaatctttaattgaacttccactg |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915672 |
aagaagtggataagaattggtgtaaattttattggcttcaagtgttgatagcctaatccttacctttccaattcttgaatctttaattgaacttccactg |
7915771 |
T |
|
| Q |
701 |
ggagctttttcacctaaatgacaattgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggac |
800 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915772 |
ggagctttttcacctaaatgacaattgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggac |
7915871 |
T |
|
| Q |
801 |
tgaaagtgtctaaaagtgttcttgttctgatccatttctgaccatatttagcaacacagtatgcatctgtgctaccatgaccatccttcatcttcatagg |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915872 |
tgaaagtgtctaaaagtgttcttgttctgatccatttctgaccatatttagcaacacagtatgcatctgtgctaccatgaccatccttcatcttcatagg |
7915971 |
T |
|
| Q |
901 |
gagaagcccttttgctcctaagatgcccatctcaagtattccgataggctgcttccatagctgtcttgctgttggtctttgatcactaatgtacaaagtg |
1000 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915972 |
gagaagcccttttgctcctaagatgcccatctcaagtattccaataggctgcttccatagctgtcttgctgttggtctttgatcactaatgtacaaagtg |
7916071 |
T |
|
| Q |
1001 |
gattcatctaaaacatggtatccaccttcaaggcaaactctaagatgaatcctacttgaaaatttctgctcatttcttctatcaccttcaagtgcaccaa |
1100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7916072 |
gattcatctaaaacatggtatccaccttcaaggcaaactctaagatgaatcctacttgaaaatttctgctcatttcttctatcaccttcaagtgcaccaa |
7916171 |
T |
|
| Q |
1101 |
aaccaaatttctcaaggctaaaccaacgagaatgaaccggtctgtg |
1146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7916172 |
aaccaaatttctcaaggctaaaccaacgagaatgaaccggtctgtg |
7916217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 7834231 - 7833874
Alignment:
| Q |
1 |
cactgcatcatgtgaccttgatgttggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtga |
100 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| | ||||||||||| |||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
7834231 |
cactgcatcatgcgatcttgatgttggaaatgtgtcaaactctccatcaagttcatcatgatgaacagattcagccgatgagagtttagtatccatgtga |
7834132 |
T |
|
| Q |
101 |
ggtggttgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatca |
200 |
Q |
| |
|
|| ||||||| |||||||| ||||||| ||||||||||||||| ||||| ||||||| || || ||||||||||||||||||||||||| || ||||| |
|
|
| T |
7834131 |
ggcggttgtcgaggacgaaattgatagtttcataagccaatcaaggacatgaagagaaatcaagtcggtagtatcaattctggataccatatcagtatca |
7834032 |
T |
|
| Q |
201 |
aaaagaggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacat |
300 |
Q |
| |
|
||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| || || || ||| || |||||||||| |
|
|
| T |
7834031 |
aaaagaggatgtgaactagaattgacgtgatgtgattcttccaatgacaaacatcattgaaccatcttccgatggtcattaatccgaaggaaagggacat |
7833932 |
T |
|
| Q |
301 |
cacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcc |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7833931 |
cacacgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcc |
7833874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 1e-87
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 7832818 - 7833158
Alignment:
| Q |
7 |
atcatgtgaccttgatgttggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtgaggtggt |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||| ||||||||||| ||||||||| | || ||||||||||||||||| ||||||| | ||| | |
|
|
| T |
7832818 |
atcatgtgatcttgatgttggaaatgtgtcaaacactttatcaagttcatcaggatgaacatattcagcccatgagagtttagtctccatgtaaagtgat |
7832917 |
T |
|
| Q |
107 |
tgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaa-aacatgttggtagtatcaattctggataccataccaatatcaaaaag |
205 |
Q |
| |
|
||| |||| |||||||||||||||||||||||| |||||| ||||||||| || | ||||||||||||||||| |||||| | || | |||||||||| |
|
|
| T |
7832918 |
tgtggaggacaaaaccgatagttccataagccaatgaagaacttgtagagaagaaaaagttggtagtatcaattcaggatactacacaagtatcaaaaag |
7833017 |
T |
|
| Q |
206 |
aggatgtgaactagtattgatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcacac |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || | ||||||||||||| |||||| |||||| | |
|
|
| T |
7833018 |
aggatgtgaactagtattgatgtaatgtgattctttgaatgacaaacatcattgaaccatctcccaaatgtgatcaaaccgaagaaaaataacatcaagc |
7833117 |
T |
|
| Q |
306 |
gaaagaagttagctttgcttcttctcatgctccatatattg |
346 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||||||| |||| |
|
|
| T |
7833118 |
taaagaagttaggtttccttgttctcatgctccataaattg |
7833158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 371 - 528
Target Start/End: Complemental strand, 7833747 - 7833590
Alignment:
| Q |
371 |
acaatttccttcctgagtggcggttcagctctaccaagcctcattgcaacaatattcattgcttggtaccttaagttgtcaatttgattaactgcgaaag |
470 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7833747 |
acaacttccttccaaagtggaggttcagctctacccagcctcattgctacaatattcgttgcttggtaccttaagttgtcaatttgattaactgtgaaag |
7833648 |
T |
|
| Q |
471 |
gttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgttagc |
528 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7833647 |
gttgtaaataatgcaactttgggagtaaaggttggccatatatatgaaacatgttagc |
7833590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 7880266 - 7880440
Alignment:
| Q |
1 |
cactgcatcatgtgaccttgatgttggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtga |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| || | ||||||||||||| ||||||||||| |
|
|
| T |
7880266 |
cactgcatcatgtgatcttgatgttggaaatgtgtcaaactcttcgtcaagttcatcaggatgactagattcaggccatgagagttta-tatccatgtga |
7880364 |
T |
|
| Q |
101 |
ggtggttgtctcggacgaaaccgatagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatca |
176 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
7880365 |
ggcggttgtctcagacgaaaccgatagttccataagccagtcaagaacatgcagaggaaaaatgttggtagtatca |
7880440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 442 - 577
Target Start/End: Original strand, 7882635 - 7882775
Alignment:
| Q |
442 |
taagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagt-aaaggttggccataaatatgaaacatgttagctagtgagagtgc |
540 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
7882635 |
taagttgtcaatttgattaactgtgaaaggttgtaaataatgcatctttaggagtgaaaggttggccatagatatgaagaatgttagctagtgagagtgc |
7882734 |
T |
|
| Q |
541 |
agtgaacctcactgtgagttg----aagctcacccattttc |
577 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
7882735 |
tgtgaacctcagtgtgagttgaatcaagctcacccattttc |
7882775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 466 - 560
Target Start/End: Original strand, 7913557 - 7913651
Alignment:
| Q |
466 |
gaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgttagctagtgagagtgcagtgaacctcactgtgagtt |
560 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
7913557 |
gaaaggttctaaataatgcatcttttggagtaaaggttggccatacatatgaaaaatgttagctggtgagagtgcagtgaacctcgctgtaagtt |
7913651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 446 - 625
Target Start/End: Original strand, 7833156 - 7833337
Alignment:
| Q |
446 |
ttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatgttagctagtgagagtgcagtga |
545 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||||||| |||||||| || ||| ||| | ||| ||||||||||||||||| ||||| ||| ||| | |
|
|
| T |
7833156 |
ttgtaaatttgattaactgtgaaatgttgtaaataatatatctttggaagcgaagtttgacaatatatatgaaacatgttagcctgtgagtgtgtagtaa |
7833255 |
T |
|
| Q |
546 |
acc--tcactgtgagttgaagctcacccattttcttaactccatgttggtgtaaaacaagaagtggataagaattggtgtaa |
625 |
Q |
| |
|
|| || ||| |||||||| ||||| ||| |||| ||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7833256 |
ccccctcgctgcaagttgaagttcacctattctctttactccctgttggtgtaaaacaagaagtgaataagaattggtgtaa |
7833337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 831 - 962
Target Start/End: Original strand, 7833389 - 7833520
Alignment:
| Q |
831 |
tccatttctgaccatatttagcaacacagtatgcatctgtgctaccatgaccatccttcatcttcatagggagaagcccttttgctcctaagatgcccat |
930 |
Q |
| |
|
|||||| |||||||||||| | |||| |||||||||| ||||||||||| |||||||||| ||| |||| |||||||||||| |||||||||||| || |
|
|
| T |
7833389 |
tccattcctgaccatatttgggtacacggtatgcatctatgctaccatgaacatccttcattttcttaggcagaagccctttttatcctaagatgcctat |
7833488 |
T |
|
| Q |
931 |
ctcaagtattccgataggctgcttccatagct |
962 |
Q |
| |
|
||||||||||| ||||||||| || ||||| |
|
|
| T |
7833489 |
ttcaagtattccattaggctgctaccgtagct |
7833520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 305 - 359
Target Start/End: Original strand, 7880519 - 7880573
Alignment:
| Q |
305 |
cgaaagaagttagctttgcttcttctcatgctccatatattggaatcaacatcca |
359 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7880519 |
cgaaagaagttagcattgcttcttctcatgctcagtatattggaatcaacatcca |
7880573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 706 - 849
Target Start/End: Original strand, 7906611 - 7906758
Alignment:
| Q |
706 |
tttttcacctaaatgacaattgtcaaaaacacctag----tgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggact |
801 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| || ||| || |||| |||||||| ||||| ||| || ||||||| ||||| ||||||| | |
|
|
| T |
7906611 |
tttttcacctatatggcaattgtcaaaaacaaacagctgatgtcatcacagggcaaggatattaaacctcctatttgtattgttcatttaatttgggttt |
7906710 |
T |
|
| Q |
802 |
gaaagtgtctaaaagtgttcttgttctgatccatttctgaccatattt |
849 |
Q |
| |
|
|||| |||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
7906711 |
gaaaatgtcgaaaagttttcttgtttagatccatttctgaccatattt |
7906758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 875 - 924
Target Start/End: Original strand, 7906801 - 7906849
Alignment:
| Q |
875 |
ccatgaccatccttcatcttcatagggagaagcccttttgctcctaagat |
924 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
7906801 |
ccatgaccatccttcatcttcataggcagaa-cacttttgctcctaagat |
7906849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 752 - 792
Target Start/End: Original strand, 21197795 - 21197835
Alignment:
| Q |
752 |
gtgcaaggatcataaacttcccatgtgtattgctcattcca |
792 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
21197795 |
gtgcaaggatcataaacttcccaagtatattgctcattcca |
21197835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 752 - 792
Target Start/End: Original strand, 27253637 - 27253677
Alignment:
| Q |
752 |
gtgcaaggatcataaacttcccatgtgtattgctcattcca |
792 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
27253637 |
gtgcaaggatcataaacttcccaagtatattgctcattcca |
27253677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 724 - 793
Target Start/End: Original strand, 11577425 - 11577494
Alignment:
| Q |
724 |
attgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccat |
793 |
Q |
| |
|
|||||||||||||| | ||| || |||||||| ||||||| ||| |||||||| || |||||||||||| |
|
|
| T |
11577425 |
attgtcaaaaacactaactgtgatcacagtgcatggatcatgaacctcccatgtatactgctcattccat |
11577494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 24 - 1140
Target Start/End: Original strand, 8415533 - 8416664
Alignment:
| Q |
24 |
ttggaaatgtgtcaaactcttcgtcaagttcatctggatgaacagactctgcccatgagagtttagtatccatgtgaggtggttgtctcggacgaaaccg |
123 |
Q |
| |
|
|||||||||| ||||||||||| || ||||| ||||||| | | || |||||||||||||||||||||||||||||||| | ||| |||||||| || |
|
|
| T |
8415533 |
ttggaaatgtatcaaactcttcatcgagttcgtctggattagctccttcggcccatgagagtttagtatccatgtgaggtggatttcttggacgaaatcg |
8415632 |
T |
|
| Q |
124 |
atagttccataagccaatcaagaacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtatt |
223 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||| || || || ||||||||||||||| | | |||||| | || || ||||| ||||||| |
|
|
| T |
8415633 |
atagttccataaaccaattaagaacatgtagagaaatatagtcggaagaatcaattctggatacaaaatcaatattaggaatagaatgtgtactagtacc |
8415732 |
T |
|
| Q |
224 |
gatgtaatgtgattcttccagtgacaaacatcattgaaccatcttccgattgtgatcaaaccggagaaaagggacatcacacgaaagaagttagctttgc |
323 |
Q |
| |
|
||||| | |||||||||| | ||||| | ||||||||| | || ||||||||| | || ||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
8415733 |
gatgtgaccggattcttccaattgcaaacttggttgaaccatttccccattgtgatcgcgctagaaaaaagcgacatcatgcgaaagaagttggctttgc |
8415832 |
T |
|
| Q |
324 |
ttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagctctaccaagcctcattgcaacaat |
423 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| | |||||||||||| || ||||| || || ||||| |||||||| |||||||| || || || |
|
|
| T |
8415833 |
ttcttctcatgctccacatatgtgaatcaacatctaacatgtactcaactgcctctttcctaagaggaggttcggctctacctagcctcatagctacgat |
8415932 |
T |
|
| Q |
424 |
attcattgcttggtaccttaagttgtcaatttgattaactgcgaaaggttgtaaataatgcatctttgggagtaaaggttggccataaatatgaaacatg |
523 |
Q |
| |
|
|||||| |||||||||||||| || |||| ||||||||||| ||| || |||||||||||||||||| || |||||||| |||||||||| || |||| |
|
|
| T |
8415933 |
attcatcgcttggtaccttaaattttcaacttgattaactgtgaagggacttaaataatgcatctttggaagcaaaggttgtccataaatataaaccatg |
8416032 |
T |
|
| Q |
524 |
ttagctagtgagagtgcagtgaacctcactgtgagttgaagctcacccattttcttaactccatgttggtgtaaaacaagaagtggataagaattggtgt |
623 |
Q |
| |
|
||||||| ||| || | ||||||||| | || ||||||||||||||||||||||| || |||| ||| || |||||||||||||||||||| || |||| |
|
|
| T |
8416033 |
ttagctattgaaagagtagtgaaccttattgctagttgaagctcacccattttcttgacaccattttgatgcaaaacaagaagtggataagagtttgtgt |
8416132 |
T |
|
| Q |
624 |
aaattttattggcttcaagtgttgatagcctaatccttacctttccaattcttgaatctttaattgaa---ctt---ccactgggagcttttt------- |
710 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||||| |||||||| || |||||||| || || | ||| ||||| |||||||||| |
|
|
| T |
8416133 |
aaattctattagcttcaagtgttgagagcctaatcctaacctttccgatccttgaatccctagctgcattgcttccaccactaggagctttttctcctcc |
8416232 |
T |
|
| Q |
711 |
--cacctaaatgacaattgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggactgaaagtg |
808 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
8416233 |
accacctaaatggcaattatcaaaaactcctagtgttattacagtgcaaggatcataaacttcccatgtgtattgttcattccatttaggactaaaagtg |
8416332 |
T |
|
| Q |
809 |
tctaaaagtgttcttgttctgatccatttctgaccatatttagcaacacagtatgcatctgtgctaccatgaccatccttcatcttcatagggagaagcc |
908 |
Q |
| |
|
|| | || ||||| ||||||||||||||||||||||| || || || ||||| ||||| ||||| ||| | | || ||||||||||| || |||||| |
|
|
| T |
8416333 |
tcaagaatagttctagttctgatccatttctgaccatacttggctacgcagtacgcatcggtgcttccacggctattgttcatcttcattggaagaagct |
8416432 |
T |
|
| Q |
909 |
cttttgctcctaagatgcccatctcaagtattccgataggctgcttccatagctgtcttgctgttggtctttgatcactaatgtacaaagtggattcatc |
1008 |
Q |
| |
|
|| |||||||||||| || | ||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
8416433 |
tttgtgctcctaagatccctacttcaagcattcctataggctgcttccatagctgtctagctgttggtctatgatcacttgcatacaaagttgattcatc |
8416532 |
T |
|
| Q |
1009 |
taaaacatggtatccaccttcaaggcaaactctaagatgaatcctacttgaaaatttctgctcatttcttctatcaccttcaagtgcaccaaaaccaaat |
1108 |
Q |
| |
|
||| |||||||| |||||||| ||||||| ||| | |||||||| ||||||||||| ||| ||||||||||||||||| | |||||||| || |
|
|
| T |
8416533 |
taagacatggtaaccaccttcgaggcaaattctcatgtgaatcctgcttgaaaatttaacctcgtttcttctatcaccttccatcattccaaaaccgtat |
8416632 |
T |
|
| Q |
1109 |
ttctcaaggctaaaccaacgagaatgaaccgg |
1140 |
Q |
| |
|
|||||||| | ||||| |||||||||||||| |
|
|
| T |
8416633 |
ttctcaagattgaaccatcgagaatgaaccgg |
8416664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 60; Significance: 5e-25; HSPs: 4)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 711 - 870
Target Start/End: Original strand, 3586 - 3745
Alignment:
| Q |
711 |
cacctaaatgacaattgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattccatttgggactgaaagtgtc |
810 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||| || ||||||||||||| |||||||||||||||||| ||||||||||| ||| | ||| | || |
|
|
| T |
3586 |
cacctaaatgacaattgtcaaaaacaccaaaagttataactgtgcaaggatcatgaacttcccatgtgtattgttcattccattttggattaaaactctc |
3685 |
T |
|
| Q |
811 |
taaaagtgttcttgttctgatccatttctgaccatatttagcaacacagtatgcatctgt |
870 |
Q |
| |
|
| |||||||||||| | ||||||| ||||||||| || ||||| || |||||||| |
|
|
| T |
3686 |
agtgattgttcttgttctaacccatttcataccatattttgctacacaataagcatctgt |
3745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 950 - 1065
Target Start/End: Original strand, 3825 - 3940
Alignment:
| Q |
950 |
tgcttccatagctgtcttgctgttggtctttgatcactaatgtacaaagtggattcatctaaaacatggtatccaccttcaaggcaaactctaagatgaa |
1049 |
Q |
| |
|
||||||||||| ||||| || |||| |||| |||||| || |||| ||||||||||| | |||||| || |||||||||| ||||||||||| |||| |
|
|
| T |
3825 |
tgcttccatagttgtctagcagttgttcttgtatcacttatatacattgtggattcatcaagaacatgataagcaccttcaagacaaactctaaggtgaa |
3924 |
T |
|
| Q |
1050 |
tcctacttgaaaattt |
1065 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
3925 |
tcctacttgagaattt |
3940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 435
Target Start/End: Original strand, 3186 - 3304
Alignment:
| Q |
317 |
gctttgcttcttctcatgctccatatattggaatcaacatccagcatgtactcaacaatttccttcctgagtggcggttcagctctaccaagcctcattg |
416 |
Q |
| |
|
|||||||||||||| | |||||||||| ||||| ||||| |||||||||||||| | ||| ||||| || || ||||| ||||| || ||||||| || |
|
|
| T |
3186 |
gctttgcttcttcttaaactccatatatgtgaatccacatcaagcatgtactcaactacttctttcctaagaggtggttctgctcttcctagcctcactg |
3285 |
T |
|
| Q |
417 |
caacaatattcattgcttg |
435 |
Q |
| |
|
| || |||||||| ||||| |
|
|
| T |
3286 |
ctacgatattcatagcttg |
3304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 3015 - 3093
Alignment:
| Q |
146 |
aacatgtagagaaaacatgttggtagtatcaattctggataccataccaatatcaaaaagaggatgtgaactagtattg |
224 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||| |||| || || ||||| || | ||||||||||||| |
|
|
| T |
3015 |
aacatgtagagaaaaattgttggtaggatcaattctggataacatattaagatgaaaaaaagaacatgaactagtattg |
3093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 752 - 793
Target Start/End: Complemental strand, 9529027 - 9528986
Alignment:
| Q |
752 |
gtgcaaggatcataaacttcccatgtgtattgctcattccat |
793 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9529027 |
gtgcaaggatcataaacatcccatgtgtattgctcattccat |
9528986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0305 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: scaffold0305
Description:
Target: scaffold0305; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 716 - 792
Target Start/End: Original strand, 13632 - 13708
Alignment:
| Q |
716 |
aaatgacaattgtcaaaaacacctagtgttatgacagtgcaaggatcataaacttcccatgtgtattgctcattcca |
792 |
Q |
| |
|
||||||||||| ||||| ||||| | ||| || ||||| ||||||||| |||| ||||| || |||||||||||||| |
|
|
| T |
13632 |
aaatgacaattatcaaatacaccaattgtaatcacagtacaaggatcaaaaacctcccaagtatattgctcattcca |
13708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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