View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17000_high_10 (Length: 269)

Name: NF17000_high_10
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17000_high_10
NF17000_high_10
[»] chr8 (4 HSPs)
chr8 (34-261)||(10628589-10628819)
chr8 (34-261)||(21119440-21119670)
chr8 (167-242)||(40637809-40637888)
chr8 (34-93)||(40637964-40638023)
[»] chr1 (5 HSPs)
chr1 (34-242)||(23197832-23198040)
chr1 (163-261)||(25549485-25549587)
chr1 (34-93)||(25549659-25549718)
chr1 (189-261)||(31774531-31774603)
chr1 (109-176)||(31774631-31774697)
[»] chr3 (5 HSPs)
chr3 (34-242)||(12833339-12833551)
chr3 (189-261)||(7814647-7814719)
chr3 (34-87)||(38276683-38276736)
chr3 (49-95)||(7814828-7814874)
chr3 (224-261)||(7814628-7814665)
[»] chr2 (2 HSPs)
chr2 (177-239)||(5599564-5599629)
chr2 (35-93)||(5599716-5599774)
[»] chr7 (3 HSPs)
chr7 (189-261)||(45806962-45807034)
chr7 (57-93)||(31588086-31588122)
chr7 (109-185)||(45807053-45807129)
[»] chr4 (3 HSPs)
chr4 (189-261)||(1242784-1242856)
chr4 (49-95)||(1242965-1243011)
chr4 (224-261)||(1242765-1242802)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 34 - 261
Target Start/End: Complemental strand, 10628819 - 10628589
Alignment:
Q  34 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctaggggcannnnnnnnnnnnnatcaaaaatatttggatcaaaattt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  10628819 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctaggggcatttttatttttttatcaaaaatatttggatcaaaattt 10628720  T
Q  134 ctctctcattttgcagaaaaactcacgtagagaacacagagaacgaaaatggcgattcttcgatctcc---gccgtgacttttctccgatctacaccgcg 230  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||||||||    
T  10628719 ctctctcattttgcagaaacactcacgtagagaacacagagaacgaaaatggcgattctccgatctccgccgccgtgacttttctccgatctacaccgcg 10628620  T
Q  231 cttcttcttctccaccgcgcttattcttctc 261  Q
    |||||||||||||||||||||| ||||||||    
T  10628619 cttcttcttctccaccgcgcttcttcttctc 10628589  T

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Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 34 - 261
Target Start/End: Complemental strand, 21119670 - 21119440
Alignment:
Q  34 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctaggggcannnnnnnnnnnnnatcaaaaatatttggatcaaaattt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  21119670 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctaggggcatttttatttttttatcaaaaatatttggatcaaaattt 21119571  T
Q  134 ctctctcattttgcagaaaaactcacgtagagaacacagagaacgaaaatggcgattcttcgatctcc---gccgtgacttttctccgatctacaccgcg 230  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||   |||||||||||||||||||||||||||||    
T  21119570 ctctctcattttgcagaaacactcacgtagagaacacagagaacgaaaatggcgattctccgatctccgccgccgtgacttttctccgatctacaccgcg 21119471  T
Q  231 cttcttcttctccaccgcgcttattcttctc 261  Q
    |||||||||||||||||||||| ||||||||    
T  21119470 cttcttcttctccaccgcgcttcttcttctc 21119440  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 40637888 - 40637809
Alignment:
Q  167 acacagagaa-cgaaaatggcgattcttc---gatctccgccgtgacttttctccgatctacaccgcgcttcttcttctc 242  Q
    |||||||||| ||||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40637888 acacagagaagcgaaaatggagattcttctccgatctccgccgtgacttttctccgatctacaccgcgcttcttcttctc 40637809  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 40638023 - 40637964
Alignment:
Q  34 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctagggg 93  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||  |||||||||||    
T  40638023 cacggagaaatggttgttttcttcaatggcatagttgtaaataggttcaaagtctagggg 40637964  T

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Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 23197832 - 23198040
Alignment:
Q  34 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctaggggcannnnnnnnnnnnnatcaaaaatatttggatcaaaattt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||| ||||||||||    
T  23197832 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctaggggcatttttatttttttatcaaaaatatttgaatcaaaattt 23197931  T
Q  134 ctctctcattttgcagaaaaactcacgtagagaacacagagaacgaaaatggcgattcttcgatctccgccgtgacttttctccgatctacaccgcgctt 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23197932 ctctctcattttgcagaaaaactcacgtagagaacacagagaacgaaaatggcgattcttcgatctccgccgtgacttttctccgatctacaccgcgctt 23198031  T
Q  234 cttcttctc 242  Q
    |||||||||    
T  23198032 cttcttctc 23198040  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 25549587 - 25549485
Alignment:
Q  163 gagaacacagagaa-cgaaaatggcgattcttc---gatctccgccgtgacttttctccgatctacaccgcgcttcttcttctccaccgcgcttattctt 258  Q
    ||||||| |||||| ||||||||| ||||||||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  25549587 gagaacagagagaagcgaaaatggagattcttctccgatctccgccgtgacttttctccgatctacatcgcgcttcttcttctccaccgcgcttcttctt 25549488  T
Q  259 ctc 261  Q
    |||    
T  25549487 ctc 25549485  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 25549718 - 25549659
Alignment:
Q  34 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctagggg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  25549718 cacggagaagtggttgttttctccaatggcatagttgtaaataggttcaaagtctagggg 25549659  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 31774603 - 31774531
Alignment:
Q  189 ttcttcgatctccgccgtgacttttctccgatctacaccgcgcttcttcttctccaccgcgcttattcttctc 261  Q
    |||| ||||||||||||||| |||||| || |||||| | ||||||||||||||||||| |||| ||||||||    
T  31774603 ttctccgatctccgccgtgatttttcttcggtctacatctcgcttcttcttctccaccgtgcttcttcttctc 31774531  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 31774697 - 31774631
Alignment:
Q  109 atcaaaaatatttggatcaaaatttctctctcattttgcagaaaaactcacgtagagaacacagagaa 176  Q
    |||||||||||||||||||||| |  |  ||||||||||||||||||| |||| |||||||| |||||    
T  31774697 atcaaaaatatttggatcaaaaatcattcctcattttgcagaaaaactaacgt-gagaacactgagaa 31774631  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 12833339 - 12833551
Alignment:
Q  34 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctaggggcannnnnnnnnnnnnatcaaaaatat-ttggatcaaaatt 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||| |             |||||||| |  |||||| |||| |    
T  12833339 cacggagaagtggttgttttctccaatggcatagttgtaaataggttcaaagttcaggggtattttcatttttttatcaaaaaaaaattggattaaaaat 12833438  T
Q  133 tctctctcattttgcagaaaaactcacgtagagaacacagagaa-cgaaaatggcgattcttc---gatctccgccgtgacttttctccgatctacaccg 228  Q
      ||||||||||||||||||| || ||| |||  ||| |||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  12833439 catctctcattttgcagaaaa-cttacgcagaacacagagagaagcgaaaatggcgattcttctctgatctccgccgtgacttttctccgatctacaccg 12833537  T
Q  229 cgcttcttcttctc 242  Q
    ||||||||||||||    
T  12833538 cgcttcttcttctc 12833551  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 7814719 - 7814647
Alignment:
Q  189 ttcttcgatctccgccgtgacttttctccgatctacaccgcgcttcttcttctccaccgcgcttattcttctc 261  Q
    |||| ||||||||||||||| |||||| || |||||| | |||||||||||||||||||||||| ||||||||    
T  7814719 ttctccgatctccgccgtgatttttcttcggtctacatctcgcttcttcttctccaccgcgcttcttcttctc 7814647  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 38276736 - 38276683
Alignment:
Q  34 cacggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtc 87  Q
    ||||||||||| |  |||||||||||||||||||||||||||||||||||||||    
T  38276736 cacggagaagttgcagttttctccaatggcatagttgtaaataggtttgaagtc 38276683  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 7814874 - 7814828
Alignment:
Q  49 gttttctccaatggcatagttgtaaataggtttgaagtctaggggca 95  Q
    ||||||||||||||||||||||||| || |||||||||  |||||||    
T  7814874 gttttctccaatggcatagttgtaattatgtttgaagttcaggggca 7814828  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 7814665 - 7814628
Alignment:
Q  224 caccgcgcttcttcttctccaccgcgcttattcttctc 261  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  7814665 caccgcgcttcttcttctccaccgtgcttcttcttctc 7814628  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 5599629 - 5599564
Alignment:
Q  177 cgaaaatggcgattcttc---gatctccgccgtgacttttctccgatctacaccgcgcttcttctt 239  Q
    ||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  5599629 cgaaaatggagattcttctccgatctccgccgtgacttttctccgatctacaccgcgcttcttctt 5599564  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 5599774 - 5599716
Alignment:
Q  35 acggagaagtggttgttttctccaatggcatagttgtaaataggtttgaagtctagggg 93  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  5599774 acggagatgtggttgttttctccaatgccatagttgtaaataggttcaaagtctagggg 5599716  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 45807034 - 45806962
Alignment:
Q  189 ttcttcgatctccgccgtgacttttctccgatctacaccgcgcttcttcttctccaccgcgcttattcttctc 261  Q
    |||| |||||| |||||||| |||||| ||||||||||| |||||||| ||||||||||||||| ||||||||    
T  45807034 ttctccgatcttcgccgtgatttttcttcgatctacacctcgcttcttattctccaccgcgcttcttcttctc 45806962  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 31588086 - 31588122
Alignment:
Q  57 caatggcatagttgtaaataggtttgaagtctagggg 93  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31588086 caatggcatagttgtaaataggtttgaagtatagggg 31588122  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 45807129 - 45807053
Alignment:
Q  109 atcaaaaatatttggatcaaaatttctctctcattttgcagaaaaactcacgtagagaacacagagaa-cgaaaatgg 185  Q
    |||||||| | ||||||||||| |  || |||||||||||||||||||||||  |||||||| ||||| |||||||||    
T  45807129 atcaaaaaaaattggatcaaaaatcatcactcattttgcagaaaaactcacg-cgagaacactgagaagcgaaaatgg 45807053  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 1242856 - 1242784
Alignment:
Q  189 ttcttcgatctccgccgtgacttttctccgatctacaccgcgcttcttcttctccaccgcgcttattcttctc 261  Q
    |||| ||||||||||||||| |||||| || |||||| | |||||||||||||||||||||||| ||||||||    
T  1242856 ttctccgatctccgccgtgatttttcttcggtctacatctcgcttcttcttctccaccgcgcttcttcttctc 1242784  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 1243011 - 1242965
Alignment:
Q  49 gttttctccaatggcatagttgtaaataggtttgaagtctaggggca 95  Q
    ||||||||||||||||||||||||| || |||||||||  |||||||    
T  1243011 gttttctccaatggcatagttgtaattatgtttgaagttcaggggca 1242965  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 1242802 - 1242765
Alignment:
Q  224 caccgcgcttcttcttctccaccgcgcttattcttctc 261  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  1242802 caccgcgcttcttcttctccaccgtgcttcttcttctc 1242765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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