View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17000_high_11 (Length: 254)

Name: NF17000_high_11
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17000_high_11
NF17000_high_11
[»] chr3 (17 HSPs)
chr3 (16-243)||(18872007-18872234)
chr3 (16-203)||(19394804-19394991)
chr3 (16-203)||(19382548-19382737)
chr3 (16-203)||(19439814-19440004)
chr3 (177-243)||(19466061-19466127)
chr3 (19-207)||(25464752-25464941)
chr3 (16-72)||(19466007-19466063)
chr3 (17-118)||(19401418-19401519)
chr3 (17-60)||(16679020-16679063)
chr3 (202-243)||(19382799-19382840)
chr3 (16-60)||(18166812-18166856)
chr3 (25-60)||(18105200-18105235)
chr3 (25-60)||(18148522-18148557)
chr3 (202-244)||(19440063-19440105)
chr3 (202-243)||(19395053-19395094)
chr3 (75-207)||(19458655-19458787)
chr3 (159-207)||(24493086-24493134)
[»] chr8 (1 HSPs)
chr8 (27-207)||(8461283-8461462)
[»] chr4 (1 HSPs)
chr4 (20-156)||(2708748-2708884)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 18872234 - 18872007
Alignment:
Q  16 catccatttcatttggttcatattttatcaggtgattatgcatgtcacagtttgtgcattgttatgcaaatcgtggattgagtttaccaaatagagccaa 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| |||||||    
T  18872234 catccatttcatttgtttcatattttatcaggtgattatgcatgtcacagtttgtgcattgttatccaaatcgtggatagagtttcccaaattgagccaa 18872135  T
Q  116 tattttgatatcaacaattaataattgtatgagatgagatcttatgtgattgtaacactgttgcttctgaattcatgtttcacttgttgtaagttgttct 215  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18872134 tattttgatatcaacaattattaattgtatgagatgagatcttatgtgattgtaacactgttgcttctgaattcatgtttcacttgttgtaagttgttct 18872035  T
Q  216 ttgggattgtccacacctcatgtatctc 243  Q
    ||||||||||||||||||||||||||||    
T  18872034 ttgggattgtccacacctcatgtatctc 18872007  T

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Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 19394804 - 19394991
Alignment:
Q  16 catccatttcatttggttcatattttatcaggtgattatgcatgtcacagtttgtgcattgttatgcaaatcgtggattgagtttaccaaatagagccaa 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| ||||||||||| ||    
T  19394804 catccatttcatttgtttcatattttatcaggtgattatgcatgtcacagtttgtgcattgttatccaattcgtggatagagttttccaaatagagcaaa 19394903  T
Q  116 tattttgatatcaacaattaataattgtatgagatgagatcttatgtgattgtaacactgttgcttctgaattcatgtttcacttgtt 203  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  19394904 tattttgatatcaacaattaataattgtatgagatgagatcatatgtgattgtaacactgttgtttctgaatttatgtttcccttgtt 19394991  T

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Target: chr3; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 19382548 - 19382737
Alignment:
Q  16 catccatttcatttggttcatattttatcaggtga--ttatgcatgtcacagtttgtgcattgttatgcaaatcgtggattgagtttaccaaatagagcc 113  Q
    ||||||||| ||||| ||| |||||||||||||||  ||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  19382548 catccattttatttgtttcgtattttatcaggtgagattatgcatgtcgcagtttgtgccttgttatccaaatcgtggatagagtttaccaaatagagcc 19382647  T
Q  114 aatattttgatatcaacaattaataattgtatgagatgagatcttatgtgattgtaacactgttgcttctgaattcatgtttcacttgtt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  19382648 aatattttgatatcaacaattaataattgtatgagatgagatcatatgtgattgtaatactgttgtttctgaattcatgtttcacttgtt 19382737  T

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Target: chr3; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 19439814 - 19440004
Alignment:
Q  16 catccatttcatttggttcatattttatcaggtgattatgcatgtcacagtttgtgcattgttatgcaaatcgtggattgagtttaccaaatagagccaa 115  Q
    ||||||||||||||| |||||||||||| ||| |||||||| |||  ||| |   ||||||||||  |||||||||||  | ||| | ||||||||||||    
T  19439814 catccatttcatttgtttcatattttattaggggattatgcttgtgccagatccggcattgttatcgaaatcgtggatataattttcaaaatagagccaa 19439913  T
Q  116 tattttgatatcaacaattaataattgtatgagatgagatcttatgtg---attgtaacactgttgcttctgaattcatgtttcacttgtt 203  Q
    |||| ||||||| | |||||| | ||||||||||||||||| ||||||   ||||||||||| ||||||||||||||||||||||| ||||    
T  19439914 tattgtgatatcgataattaagagttgtatgagatgagatcatatgtgattattgtaacactattgcttctgaattcatgtttcacatgtt 19440004  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 177 - 243
Target Start/End: Original strand, 19466061 - 19466127
Alignment:
Q  177 tgcttctgaattcatgtttcacttgttgtaagttgttctttgggattgtccacacctcatgtatctc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19466061 tgcttctgaattcatgtttcacttgttgtaagttgttctttgggattgtccacacctcatgtatctc 19466127  T

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Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 25464752 - 25464941
Alignment:
Q  19 ccatttcatttggttcatattttatcaggtgattatgcatgtcacagtttgtgcat-tgttatgcaaatcgtggattgagtttaccaaatagagccaata 117  Q
    |||||||||||| ||||||||||||||||| ||||||||| |  ||| |  ||||  |||||||||||| ||||||  | ||| | ||||||||||||||    
T  25464752 ccatttcatttgcttcatattttatcaggtcattatgcatatggcagatcctgcaaatgttatgcaaatggtggatataattttcaaaatagagccaata 25464851  T
Q  118 ttttgatatcaacaattaataattgtatgagatgagatcttatgtgattgtaacactgttgcttctgaattcatgtttcacttgttgtaa 207  Q
    || | |||| |||||| || | ||||||||||||| ||| ||||| |||||| || ||||||| |||||||||  |||||||||||||||    
T  25464852 ttgtaatataaacaataaaaagttgtatgagatgatatcatatgtcattgtaccaatgttgctgctgaattcaattttcacttgttgtaa 25464941  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 19466007 - 19466063
Alignment:
Q  16 catccatttcatttggttcatattttatcaggtgattatgcatgtcacagtttgtgc 72  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  19466007 catccatttcatttgtttcatattttatcaggtgattatgcatttcacagtttgtgc 19466063  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 19401418 - 19401519
Alignment:
Q  17 atccatttcatttggttcatattttatcaggtgattatgcatgtcacagtttgtgcattgttatgcaaatcgtggattgagtttaccaaatagagccaat 116  Q
    ||||||||  |||| |||||||||||||||||||||||||||||   || |  |||||||||||||||||| | |||  | ||| ||||| |||||||||    
T  19401418 atccattttgtttgcttcatattttatcaggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaat 19401517  T
Q  117 at 118  Q
    ||    
T  19401518 at 19401519  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 16679020 - 16679063
Alignment:
Q  17 atccatttcatttggttcatattttatcaggtgattatgcatgt 60  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  16679020 atccatttcatttgcttcatattttctcaggtgattatgcatgt 16679063  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 19382799 - 19382840
Alignment:
Q  202 ttgtaagttgttctttgggattgtccacacctcatgtatctc 243  Q
    ||||||||||||||||||| ||| ||||||||||||||||||    
T  19382799 ttgtaagttgttctttgggcttggccacacctcatgtatctc 19382840  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 18166812 - 18166856
Alignment:
Q  16 catccatttcatttggttcatattttatcaggtgattatgcatgt 60  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||    
T  18166812 catccatttcatttgtttcatattttatcaggttattctgcatgt 18166856  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 18105200 - 18105235
Alignment:
Q  25 catttggttcatattttatcaggtgattatgcatgt 60  Q
    |||||| |||||||||||||||||||||||||||||    
T  18105200 catttgcttcatattttatcaggtgattatgcatgt 18105235  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 18148522 - 18148557
Alignment:
Q  25 catttggttcatattttatcaggtgattatgcatgt 60  Q
    |||||| |||||||||||||||||||||||||||||    
T  18148522 catttgcttcatattttatcaggtgattatgcatgt 18148557  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 244
Target Start/End: Original strand, 19440063 - 19440105
Alignment:
Q  202 ttgtaagttgttctttgggattgtccacacctcatgtatctca 244  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||    
T  19440063 ttgtaagctgttctttgggcttgtccacaccacatgtatctca 19440105  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 19395053 - 19395094
Alignment:
Q  202 ttgtaagttgttctttgggattgtccacacctcatgtatctc 243  Q
    ||||||||||||||||||| | || |||||||||||||||||    
T  19395053 ttgtaagttgttctttgggctagtgcacacctcatgtatctc 19395094  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 19458655 - 19458787
Alignment:
Q  75 tgttatgcaaatcgtggattgagtttaccaaatagagccaatattttgatatcaacaattaataattgtatgagatgagatcttatgtgattgtaacact 174  Q
    ||||||||||||| |||||  | ||| ||||| |||||||||||| |  ||||||||||||  | || | ||| |||||||  ||||||||| || |  |    
T  19458655 tgttatgcaaatcatggatataattttccaaacagagccaatattgtattatcaacaattaggagttatctgatatgagattatatgtgattatacctat 19458754  T
Q  175 gttgcttctgaattcatgtttcacttgttgtaa 207  Q
     ||||| |||| ||||| |||||||| ||||||    
T  19458755 tttgctgctgacttcatctttcacttcttgtaa 19458787  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 24493134 - 24493086
Alignment:
Q  159 atgtgattgtaacactgttgcttctgaattcatgtttcacttgttgtaa 207  Q
    ||||||||||| || ||||| || ||||||||| |||||||||||||||    
T  24493134 atgtgattgtaccattgttgattttgaattcatctttcacttgttgtaa 24493086  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 8461283 - 8461462
Alignment:
Q  27 tttggttcatattttatcaggtg-attatgcatgtcacagtttgtgcattgttatgcaaatcgtggattgagtttaccaaatagagccaatattttgata 125  Q
    |||| ||| |||||||||||||| |||||||||||  ||| |  |||||| ||||  || ||||||||  | ||| | |||||||||||||||| |||||    
T  8461283 tttgcttcgtattttatcaggtggattatgcatgtggcagatcctgcatttttat--aagtcgtggatataattttctaaatagagccaatattgtgata 8461380  T
Q  126 tcaacaattaataattgtatgagatgagatcttatgtgattgtaacactgttgcttctgaattcatgtttcacttgttgtaa 207  Q
    ||| ||||||| | ||||||||||||||||| | |||||||||| ||||||| || |||||| ||| |||||||||||||||    
T  8461381 tcagcaattaagagttgtatgagatgagatcatttgtgattgtatcactgtttctgctgaatacatctttcacttgttgtaa 8461462  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 2708884 - 2708748
Alignment:
Q  20 catttcatttggttcatattttatcaggtgattatgcatgtcacagtttgtgcattgttatgcaaatcgtggattgagtttaccaaatagagccaatatt 119  Q
    ||||||||||  |||||||||||||||||| |||||| |||  |||||  ||||||||||||||||| ||||||  | ||| ||||| ||||||||||||    
T  2708884 catttcattttcttcatattttatcaggtggttatgcgtgtggcagttcctgcattgttatgcaaattgtggatgtaattttccaaagagagccaatatt 2708785  T
Q  120 ttgatatcaacaattaataattgtatgagatgagatc 156  Q
     | | ||||| |||||| | |||||| ||||||||||    
T  2708784 gtcacatcaataattaagagttgtataagatgagatc 2708748  T

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