View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17000_high_4 (Length: 515)
Name: NF17000_high_4
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 9 - 496
Target Start/End: Original strand, 23212632 - 23213119
Alignment:
| Q |
9 |
agcacagaagtactaataatggaatggaaacactttttcagattactgtttatttatgattatgatagatagttctttttactcttctttttatagaaga |
108 |
Q |
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| T |
23212632 |
agcacagaagtactaataatggaatggaaacactttttcagattactgtttatttatgattatgatagatagttctttttactcttctttttatagaaga |
23212731 |
T |
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| Q |
109 |
gaagatctgagctattcttaatatgaaaaagatgtaatactactatgtatctggatggatgaatgtgtaaataaatatatacctttaggtgcttatcgtt |
208 |
Q |
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| T |
23212732 |
gaagatctcagctattcttaatatgaaaaagatgtaatactactatgtatctggatggatgaatgtgtaaataaatatatacctttaggtgcttatcgtt |
23212831 |
T |
|
| Q |
209 |
acgattattttgttgataaaattgttaccaaactaactcacaaaaagcgatgaaatatcttaattggttgttttatccaccattgcatgatttccgcaag |
308 |
Q |
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| T |
23212832 |
acgattattttgttgataaaattgttacaaaactaactcacaaaaagcgatgaaatatcttaattggttgttttatccaccattgcatgatttccgcaag |
23212931 |
T |
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| Q |
309 |
caaggcatattaatgggcttatgttatgattgaggagttagaagtaacttgctgaaaacagaaaaatctgtcaccaactaacctatctagcaaattagtc |
408 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23212932 |
caaggcatcttaatgggcttatgttatgattgaggagttagaagtaacttgctgaaaacagaaaaatctgtcaccaactaacctatctagcaaattagtc |
23213031 |
T |
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| Q |
409 |
atcaaagctaactgtgaaaagatgaatatcaatcatttcaagtttgctgtgcaaagatgaaaatgactctggatggagacttggtgag |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213032 |
atcaaagctaactgtgaaaagatgaatatcaatcatttcaagtttgctgtgcaaagatgaaaatgactctggatggagacttggtgag |
23213119 |
T |
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