View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17000_high_5 (Length: 387)
Name: NF17000_high_5
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 3939036 - 3938688
Alignment:
| Q |
16 |
agatatacattttcagtgacttcaacttgagaaccacaaggttcctgcaattaaaaacagtggaaattataggatccaatcggatttgaaaatcatcatc |
115 |
Q |
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| T |
3939036 |
agatatacattttcagtgacttcaacttgagaaccacaaggttcctgcaattaaaaacagtggaaattataggatccaatcggatttgaaaatcatcatc |
3938937 |
T |
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| Q |
116 |
agtgccagacaagtctaaggtaaggtaagattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacatatttgaatga |
215 |
Q |
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| T |
3938936 |
agtgccagacaagtctaagg-----taagattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacatctttgaa--- |
3938845 |
T |
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| Q |
216 |
agccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagctaagaagtttggagagcc |
315 |
Q |
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| T |
3938844 |
---------------ggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagctaagaagtttggagagcc |
3938760 |
T |
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| Q |
316 |
ttggtcgtcaaaatcaagattgagaagtgagagccatagttggttccatttcttggagaggatgcttgttgc |
387 |
Q |
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| T |
3938759 |
ttggtcgtcaaaatcaagagtgagaactgagagccatagttggttccatttcttggagaggatgcttgttgc |
3938688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 296
Target Start/End: Complemental strand, 12651782 - 12651704
Alignment:
| Q |
218 |
ccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaag |
296 |
Q |
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| T |
12651782 |
ccacatttgagtcggaacgattggattggcgaggttgggtcacgcgtgagcatgactgagtagacaaaaagtcgaaaag |
12651704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 47606574 - 47606642
Alignment:
| Q |
316 |
ttggtcgtcaaaatcaagattgagaagtgagagccatagttggttccatttcttggagaggatgcttgt |
384 |
Q |
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| T |
47606574 |
ttggtcgtcgaagtgaaaattaagaactgagagccatagtgggttccatctctttgagaggatgcttgt |
47606642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 12505027 - 12504948
Alignment:
| Q |
218 |
ccacatttgagacggaatgatcggatgggcaaggaagcgtcacgcatgagcatgactaagtagacaaaatgtcgaaaagc |
297 |
Q |
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| T |
12505027 |
ccacatttgaggtggaacaatcggatgggcaatgtggggtcacggatgagcatgactgagtagacgaaaagtcgaaaagc |
12504948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 12485994 - 12485932
Alignment:
| Q |
143 |
agattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacat |
205 |
Q |
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| T |
12485994 |
agattctcaattccttttttgacagcaacaggaacaaatcgattgatatcatgtggatcacat |
12485932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 12507426 - 12507364
Alignment:
| Q |
143 |
agattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacat |
205 |
Q |
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| T |
12507426 |
agattctcaattccttttttgacagcaacaggaacaaatcgattgatatcatgtggatcacat |
12507364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 12658312 - 12658250
Alignment:
| Q |
143 |
agattatcaattcctcgttttacagcaacagaaatgaatcgattgatatcatatggatcacat |
205 |
Q |
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| T |
12658312 |
agattctcaattccttttttgacagcaacaggaacaaatcgattgatatcatgtggatcacat |
12658250 |
T |
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