View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17000_high_6 (Length: 356)
Name: NF17000_high_6
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 90 - 342
Target Start/End: Original strand, 33360618 - 33360870
Alignment:
| Q |
90 |
tatgtttgcaaggatcaaagtatatttaattaaaccagtatcttaagttaattaaattaaagagtgaattattaattttttgctgactatgttacagata |
189 |
Q |
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| T |
33360618 |
tatgtttgcaaggatcaaagtatatttaattaaaccagtatcttaagttaattaaattaaacagtgaattattaattttttgctgactatgttgcagata |
33360717 |
T |
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| Q |
190 |
agaaagacacattgtgactatttcatgtgggaggatgacttcattgcgtcccaagctgcaatggttgagttgcaggaaaccacgattgagagaaagatgg |
289 |
Q |
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| T |
33360718 |
agaaagacacattgtgactatttcatgtgggaggatgacttcattgcgtcccaagctgcaatggttgagttgcaggaaaccacgattgagagaaagatgg |
33360817 |
T |
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| Q |
290 |
aagccatgataattcaaatgaataaggatatgaaagccatgaaaattcaaatt |
342 |
Q |
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| T |
33360818 |
aagccatgataattcaaatgaataaggatatgaaagccatgaaaattcaaatt |
33360870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 8942830 - 8942905
Alignment:
| Q |
157 |
attattaattttttgctgactatgttacagataagaaagacacattgtgactatttcatgtgggaggatgacttca |
232 |
Q |
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| T |
8942830 |
attattaatattttgctgactatgttggagataaaaatgacacactgtgactacttcacgtgggaggatgacttca |
8942905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 8975208 - 8975132
Alignment:
| Q |
157 |
attattaattttttgctgactatgttacagataagaaa-gacacattgtgactatttcatgtgggaggatgacttca |
232 |
Q |
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| T |
8975208 |
attattaattttttgccgactatgttggagataaaaaatgacacactgtgactacttcacctgggaggatgacttca |
8975132 |
T |
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