View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17000_high_9 (Length: 283)
Name: NF17000_high_9
Description: NF17000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17000_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 16378095 - 16378355
Alignment:
| Q |
1 |
tcaataaaatcaaataaaggtttcaattttaaatttcagaacatagaggctttaataccatgtgttctccttgtagtaatccatagtatgagtacctctt |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16378095 |
tcaataaaatcaaataaaggctttaattttaaatttcagaacatagaggctttaataccatgtgttctccttgtagtaatccatagtatgagtacctctt |
16378194 |
T |
|
| Q |
101 |
gacttgaaaaagacttgttataatgggtcattctagtggtgcaagttgtaccaaatatatgcctaaaagttttggacataaacataatatctccctcttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16378195 |
gacttgaaaaagacttgttataatgggtcattctagtggtgcaagttgtaccaaatatatgcctaaaagttttggacataaacataatatctccctcttt |
16378294 |
T |
|
| Q |
201 |
taaagttatgaagtattgaacattagggcaagtcaagatctttttcattaacaattatctagataaa |
267 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16378295 |
taaagttatgaagtattggacatt------agtcaagatctttttcattaacaattatctagataaa |
16378355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University